Factsheet for TraesCS3A01G439500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G473600.1	Wheat	nucleus	92.94	92.94
TraesCS3D01G432300.2	Wheat	nucleus	92.37	92.37
Os08t0435700-00	Rice	nucleus	52.54	72.09
HORVU3Hr1G096010.6	Barley	nucleus	71.75	66.49
Zm00001d032194_P002	Maize	nucleus, plastid	66.38	61.52
GSMUA_Achr11P...	Banana	nucleus	31.36	40.36
TraesCS4A01G211100.1	Wheat	nucleus	29.66	38.04
TraesCS3A01G187800.1	Wheat	nucleus	33.9	36.92
CDY67868	Canola	nucleus	30.79	36.58
Bra003995.1-P	Field mustard	nucleus	30.51	36.36
CDY07345	Canola	nucleus	30.51	36.24
OQU80507	Sorghum	nucleus	68.93	35.72
VIT_14s0108g01010.t01	Wine grape	nucleus	46.05	34.24
CDY40941	Canola	nucleus	30.51	33.75
TraesCS4A01G262500.3	Wheat	nucleus	26.27	33.7
CDX95921	Canola	nucleus	30.23	33.44
Bra004394.1-P	Field mustard	nucleus	30.23	33.44
CDY50737	Canola	nucleus	32.49	33.43
Os08t0435725-00	Rice	cytosol	9.32	33.0
AT1G69560.2	Thale cress	nucleus	32.2	32.95
AT1G26780.2	Thale cress	nucleus	33.33	32.87
CDY44993	Canola	nucleus	32.49	32.58
CDY46444	Canola	nucleus	32.49	32.58
Bra016285.1-P	Field mustard	nucleus	32.49	32.58
KRH50566	Soybean	nucleus	38.7	31.42
Solyc05g007870.1.1	Tomato	nucleus	35.88	30.46
VIT_01s0026g02600.t01	Wine grape	nucleus	38.98	30.2
PGSC0003DMT400047415	Potato	nucleus	36.44	30.07
KRG89586	Soybean	nucleus	40.4	29.42
KRH74887	Soybean	plastid	38.14	29.03
KRH70748	Soybean	nucleus	37.85	28.69
TraesCS4A01G047900.1	Wheat	nucleus	14.69	27.37
TraesCS7A01G526600.1	Wheat	nucleus	18.08	21.99
TraesCS7A01G526500.1	Wheat	nucleus	18.36	21.89
TraesCS4A01G006100.1	Wheat	nucleus	16.67	21.61
TraesCS6A01G173800.1	Wheat	nucleus	18.08	21.48
TraesCS5A01G159600.1	Wheat	nucleus	18.08	19.05
TraesCS1A01G223600.1	Wheat	nucleus	16.1	17.22
TraesCS3A01G365200.1	Wheat	nucleus	18.36	14.07

Protein Annotations

EnsemblPlants:TraesCS3A01G439500.1	EnsemblPlantsGene:TraesCS3A01G439500	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF697	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:682476350..682479641

Molecular Weight (calculated)

37511.7 Da

IEP (calculated)

8.249

GRAVY (calculated)

-0.387

Length

354 amino acids

Sequence
(BLAST)

001: MPSTSACPPW LVRMVAANDD QASSSSSSKG GGAVLTTGTA TIDKGYLGGG GAGSNAADPQ ESSSSGQSRH AARGHWRPAE DMKLRELVAL YGPQNWNLIA
101: EKLDGRSGKS CRLRWFNQLD PRISKRPFSD EEEERLMAAH RFYGNKWSMI ARLFPGRTDN AVKNHWHVIM ARKYREQSIA YRRRKLNQAV QRTLDSSSGV
201: AAGAGHVDVV GHRHNHLLVA ANDSAVFADP YGFSFSHCCL SFPAGAAAAS ALEPTFCLFP GPGAASNSVH DGRLSWPDAM AVRGGAGGGG LYGEPLPARG
301: GWTGGGHHEM AWFNSDDANG SSAAVFAVTD QAGVHLDGTS PSPTYIDFLG VGAT

Best Arabidopsis Sequence Match ( AT1G69560.2 )
(BLAST)

001: MMFKVIFNIC SSPPMRMEMV HADVASLSIT PCFPSSLSSS SHHHYNQQQH CIMSEDQHHS MDQTTSSDYF SLNIDNAQHL RSYYTSHREE DMNPNLSDYS
101: NCNKKDTTVY RSCGHSSKAS VSRGHWRPAE DTKLKELVAV YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH RLYGNKWAMI
201: ARLFPGRTDN SVKNHWHVIM ARKFREQSSS YRRRKTMVSL KPLINPNPHI FNDFDPTRLA LTHLASSDHK QLMLPVPCFP GYDHENESPL MVDMFETQMM
301: VGDYIAWTQE ATTFDFLNQT GKSEIFERIN EEKKPPFFDF LGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.