Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016285.1-P | Field mustard | nucleus | 96.32 | 96.32 |
| CDY46444 | Canola | nucleus | 96.32 | 96.32 |
| CDY50737 | Canola | nucleus | 82.72 | 84.88 |
| AT1G26780.2 | Thale cress | nucleus | 82.15 | 80.78 |
| CDY67868 | Canola | nucleus | 49.01 | 58.05 |
| CDY07345 | Canola | nucleus | 48.44 | 57.38 |
| CDY40941 | Canola | nucleus | 49.29 | 54.38 |
| CDY35992 | Canola | nucleus | 23.8 | 53.5 |
| CDY21728 | Canola | nucleus | 23.8 | 53.5 |
| CDX95921 | Canola | nucleus | 48.44 | 53.44 |
| CDX83880 | Canola | nucleus | 24.08 | 46.7 |
| CDX96475 | Canola | nucleus | 28.05 | 43.42 |
| CDX72988 | Canola | nucleus | 27.76 | 43.36 |
| CDX82074 | Canola | nucleus | 28.33 | 42.92 |
| CDY58312 | Canola | nucleus | 28.33 | 42.73 |
| Os08t0435700-00 | Rice | nucleus | 30.88 | 42.25 |
| CDX96742 | Canola | nucleus | 27.76 | 40.5 |
| CDX81853 | Canola | nucleus | 28.33 | 40.49 |
| CDY21727 | Canola | nucleus | 28.05 | 39.44 |
| CDY44415 | Canola | nucleus | 28.05 | 37.93 |
| CDY71713 | Canola | nucleus | 24.65 | 37.83 |
| CDY28302 | Canola | nucleus | 25.78 | 36.26 |
| GSMUA_Achr6P02580_001 | Banana | nucleus | 36.26 | 36.16 |
| CDX75353 | Canola | nucleus | 25.5 | 35.86 |
| CDY30264 | Canola | nucleus | 26.35 | 35.77 |
| GSMUA_Achr5P23290_001 | Banana | nucleus | 30.59 | 35.76 |
| CDX68977 | Canola | nucleus | 25.21 | 35.6 |
| CDY16884 | Canola | nucleus | 30.88 | 34.94 |
| CDX72405 | Canola | nucleus | 23.8 | 34.85 |
| CDY02687 | Canola | nucleus | 30.31 | 34.52 |
| CDX85443 | Canola | nucleus | 29.75 | 34.2 |
| CDY46114 | Canola | nucleus | 23.23 | 34.02 |
| CDY38460 | Canola | nucleus | 31.16 | 33.95 |
| CDY69058 | Canola | nucleus | 25.21 | 33.71 |
| CDY20004 | Canola | nucleus | 27.2 | 33.45 |
| CDY67808 | Canola | nucleus | 15.01 | 33.33 |
| TraesCS3B01G473600.1 | Wheat | nucleus | 33.43 | 33.33 |
| CDX83109 | Canola | nucleus | 15.3 | 33.33 |
| CDY66025 | Canola | nucleus | 26.91 | 32.99 |
| CDX70776 | Canola | nucleus | 28.9 | 32.59 |
| CDX78761 | Canola | nucleus | 28.9 | 32.59 |
| TraesCS3A01G439500.1 | Wheat | nucleus | 32.58 | 32.49 |
| TraesCS3D01G432300.2 | Wheat | nucleus | 32.58 | 32.49 |
| VIT_01s0026g02600.t01 | Wine grape | nucleus | 41.08 | 31.73 |
| Zm00001d032194_P002 | Maize | nucleus, plastid | 34.28 | 31.68 |
| Solyc05g007870.1.1 | Tomato | nucleus | 37.39 | 31.65 |
| KRH50566 | Soybean | nucleus | 39.09 | 31.65 |
| PGSC0003DMT400047415 | Potato | nucleus | 37.39 | 30.77 |
| CDY66170 | Canola | nucleus | 27.2 | 30.57 |
| KRH74887 | Soybean | plastid | 39.66 | 30.11 |
| HORVU3Hr1G096010.6 | Barley | nucleus | 32.29 | 29.84 |
| KRH70748 | Soybean | nucleus | 39.09 | 29.55 |
| KRG89586 | Soybean | nucleus | 39.38 | 28.6 |
| CDX74436 | Canola | nucleus | 26.63 | 26.04 |
| CDY12830 | Canola | nucleus | 18.13 | 25.3 |
| GSMUA_Achr7P18390_001 | Banana | nucleus, plastid | 32.86 | 24.68 |
| CDY01420 | Canola | nucleus | 18.13 | 24.33 |
| CDY30608 | Canola | nucleus | 18.13 | 24.15 |
| CDY57355 | Canola | nucleus | 18.98 | 24.1 |
| CDX72621 | Canola | nucleus | 17.28 | 23.02 |
| CDY29542 | Canola | nucleus | 17.28 | 23.02 |
| CDY23023 | Canola | nucleus | 18.41 | 22.41 |
| CDY02098 | Canola | nucleus | 18.41 | 22.18 |
| CDY22442 | Canola | nucleus | 17.28 | 22.18 |
| CDX75635 | Canola | nucleus | 18.7 | 22.07 |
| CDY38933 | Canola | nucleus | 18.13 | 21.92 |
| CDX69287 | Canola | nucleus | 18.7 | 21.57 |
| CDX89554 | Canola | nucleus | 17.85 | 21.5 |
| CDY44045 | Canola | nucleus | 17.28 | 21.4 |
| CDY07907 | Canola | nucleus | 19.26 | 20.48 |
| CDX73963 | Canola | nucleus | 19.26 | 20.3 |
| CDY20494 | Canola | nucleus | 20.4 | 19.57 |
| CDX68566 | Canola | nucleus | 17.28 | 19.43 |
| CDY27271 | Canola | nucleus | 20.4 | 19.3 |
| CDX72208 | Canola | nucleus | 20.11 | 19.29 |
| CDX74825 | Canola | nucleus | 21.53 | 18.95 |
| CDY43567 | Canola | nucleus | 11.05 | 17.97 |
| OQU80507 | Sorghum | nucleus | 34.56 | 17.86 |
| CDY70901 | Canola | nucleus | 10.48 | 12.94 |
| CDY70773 | Canola | nucleus | 10.48 | 12.94 |
| Os08t0435725-00 | Rice | cytosol | 2.27 | 8.0 |
| CDX83108 | Canola | cytosol | 0.57 | 5.13 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078I779 | UniProt:A0A078I779 | EnsemblPlants:CDY44993 | ProteinID:CDY44993 |
| ProteinID:CDY44993.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00081187001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF473 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EBBF5B | SEG:seg |
Description
BnaCnng12230DBnaCnng12230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I779]
Coordinates
chrLK032608:+:141992..143438
Molecular Weight (calculated)
40828.6 Da
IEP (calculated)
7.431
GRAVY (calculated)
-0.879
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MFILEKQWRT DEVAAARREA SPWDFPFNDI NVQHHRRCNT SHEFDILKSP VGDNVEGSNN HNPNYSNNES GKKETTNSGQ SWSSSSSKPS VLGRGHWRPA
101: EDVKLKELVA IYGPQNWNLI AEKLQGRSGK SCRLRWFNQL DPRINRRAFT EDEEERLMQA HRLYGNKWAM IARLFPGRTD NSVKNHWHVI MARKYREHSS
201: AYRRRKLMIN NPLKPHLSNH PSPNPNHHSF ISTHHYFTQP FHEFNLTHHL VNNASITPDH NQLVLPFHCF QGYESNETPM VVSMFGNQIM GGDNVGVMSE
301: GLYDYPYIDS TSHEKGVPNE PRSWIGMEGE DEEVVETAKQ QPHFFDFLGL GTS
101: EDVKLKELVA IYGPQNWNLI AEKLQGRSGK SCRLRWFNQL DPRINRRAFT EDEEERLMQA HRLYGNKWAM IARLFPGRTD NSVKNHWHVI MARKYREHSS
201: AYRRRKLMIN NPLKPHLSNH PSPNPNHHSF ISTHHYFTQP FHEFNLTHHL VNNASITPDH NQLVLPFHCF QGYESNETPM VVSMFGNQIM GGDNVGVMSE
301: GLYDYPYIDS TSHEKGVPNE PRSWIGMEGE DEEVVETAKQ QPHFFDFLGL GTS
001: MFITEKQVWM DEIVARRASS SWDFPFNDIN IHQHHHRHCN TSHEFEILKS PLGDVAVHEE ESNNNNPNFS NSESGKKETT DSGQSWSSSS SKPSVLGRGH
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGYE NNEPPMVVSM FGNQMMVGDN
301: VGATSDALCN IPHIDPSNQE KPEPNDAMHW IGMDAVDEEV FEKAKQQPHF FDFLGLGTA
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGYE NNEPPMVVSM FGNQMMVGDN
301: VGATSDALCN IPHIDPSNQE KPEPNDAMHW IGMDAVDEEV FEKAKQQPHF FDFLGLGTA
Arabidopsis Description
MYB117MYB117 [Source:UniProtKB/TrEMBL;Acc:A0A178WCI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.