Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73963 | Canola | nucleus | 94.88 | 94.03 |
| CDY70901 | Canola | nucleus | 66.57 | 77.27 |
| CDY70773 | Canola | nucleus | 66.27 | 76.92 |
| AT3G09230.1 | Thale cress | nucleus | 74.7 | 63.1 |
| CDX83109 | Canola | nucleus | 20.78 | 42.59 |
| CDY21728 | Canola | nucleus | 17.47 | 36.94 |
| CDY35992 | Canola | nucleus | 17.17 | 36.31 |
| CDY27271 | Canola | nucleus | 38.25 | 34.05 |
| CDX72208 | Canola | nucleus | 37.65 | 33.97 |
| CDY20494 | Canola | nucleus | 36.75 | 33.15 |
| CDX83880 | Canola | nucleus | 18.07 | 32.97 |
| CDY22442 | Canola | nucleus | 26.51 | 32.0 |
| CDY44045 | Canola | nucleus | 27.11 | 31.58 |
| CDX75635 | Canola | nucleus | 28.31 | 31.44 |
| CDX72621 | Canola | nucleus | 25.0 | 31.32 |
| CDY29542 | Canola | nucleus | 25.0 | 31.32 |
| CDY30608 | Canola | nucleus | 25.0 | 31.32 |
| CDY12830 | Canola | nucleus | 23.8 | 31.23 |
| CDX69287 | Canola | nucleus | 28.31 | 30.72 |
| CDX74825 | Canola | nucleus | 37.05 | 30.67 |
| CDY57355 | Canola | nucleus | 25.6 | 30.58 |
| CDY01420 | Canola | nucleus | 24.1 | 30.42 |
| CDY38933 | Canola | nucleus | 26.51 | 30.14 |
| CDY23023 | Canola | nucleus | 26.2 | 30.0 |
| CDX89554 | Canola | nucleus | 26.2 | 29.69 |
| CDY02098 | Canola | nucleus | 26.2 | 29.69 |
| CDX96475 | Canola | nucleus | 19.58 | 28.51 |
| CDX82074 | Canola | nucleus | 19.88 | 28.33 |
| CDX72988 | Canola | nucleus | 19.28 | 28.32 |
| CDY58312 | Canola | nucleus | 19.88 | 28.21 |
| CDX81853 | Canola | nucleus | 20.48 | 27.53 |
| CDX96742 | Canola | nucleus | 19.88 | 27.27 |
| CDY21727 | Canola | nucleus | 20.18 | 26.69 |
| CDY71713 | Canola | nucleus | 18.37 | 26.52 |
| CDX68566 | Canola | nucleus | 23.8 | 25.16 |
| CDY30264 | Canola | nucleus | 19.58 | 25.0 |
| CDY43567 | Canola | nucleus | 16.27 | 24.88 |
| CDY46114 | Canola | nucleus | 17.77 | 24.48 |
| CDX72405 | Canola | nucleus | 17.77 | 24.48 |
| CDX68977 | Canola | nucleus | 18.37 | 24.4 |
| CDX75353 | Canola | nucleus | 18.37 | 24.3 |
| CDY28302 | Canola | nucleus | 18.07 | 23.9 |
| CDY44415 | Canola | nucleus | 17.77 | 22.61 |
| CDY67808 | Canola | nucleus | 10.54 | 22.01 |
| CDY67868 | Canola | nucleus | 19.58 | 21.81 |
| CDY07345 | Canola | nucleus | 18.98 | 21.14 |
| CDY40941 | Canola | nucleus | 19.88 | 20.62 |
| CDY20004 | Canola | nucleus | 17.77 | 20.56 |
| CDY66025 | Canola | nucleus | 17.77 | 20.49 |
| CDX78761 | Canola | nucleus | 18.98 | 20.13 |
| CDX70776 | Canola | nucleus | 18.98 | 20.13 |
| CDX95921 | Canola | nucleus | 19.28 | 20.0 |
| CDY16884 | Canola | nucleus | 18.37 | 19.55 |
| CDY02687 | Canola | nucleus | 18.07 | 19.35 |
| CDY69058 | Canola | nucleus | 15.36 | 19.32 |
| CDY44993 | Canola | nucleus | 20.48 | 19.26 |
| CDX85443 | Canola | nucleus | 17.77 | 19.22 |
| CDY50737 | Canola | nucleus | 19.88 | 19.19 |
| CDY46444 | Canola | nucleus | 20.18 | 18.98 |
| CDY38460 | Canola | nucleus | 18.37 | 18.83 |
| CDY66170 | Canola | nucleus | 17.77 | 18.79 |
| CDX74436 | Canola | nucleus | 19.58 | 18.01 |
| CDX83108 | Canola | cytosol | 1.2 | 10.26 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078F4A8 | UniProt:A0A078F4A8 | EnsemblPlants:CDY07907 | ProteinID:CDY07907 |
| ProteinID:CDY07907.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00125105001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF524 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF34AE | SEG:seg |
Description
BnaC03g36160DBnaC03g36160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4A8]
Coordinates
chrLK031982:+:67035..68830
Molecular Weight (calculated)
36449.9 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.514
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRSERRGK ERVKVAWSAE EDVVLSNLVE KFGARNWSLL ARSVPGRTGK SCRLRWCNQL DPSLKRNPFT EVEDQAIITA HGIHGNKWSV IAKLLPGRTD
101: NAIKNHWNAT LRRRCMDVEM LTTNNLVPED SGFDRTMNTI AASSEETFSS GGGGHVTTPL VSSDGKEATS MDISEEQCRG NDPPTLFRPV ARLSSFNAYN
201: HMEGSSFSKF QSCKQDAAML RLLEGACNER FVPQKCGSGC CSDSPVDISK QNSLLGPEFV DHLDPPTFPS YELAAIATEI SSLAWLRSGL ESSSVRAMEE
301: AAGRLRPQGS RGHRDHYLAS KQGKSITNVL ST
101: NAIKNHWNAT LRRRCMDVEM LTTNNLVPED SGFDRTMNTI AASSEETFSS GGGGHVTTPL VSSDGKEATS MDISEEQCRG NDPPTLFRPV ARLSSFNAYN
201: HMEGSSFSKF QSCKQDAAML RLLEGACNER FVPQKCGSGC CSDSPVDISK QNSLLGPEFV DHLDPPTFPS YELAAIATEI SSLAWLRSGL ESSSVRAMEE
301: AAGRLRPQGS RGHRDHYLAS KQGKSITNVL ST
001: MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST
Arabidopsis Description
MYB1Transcription factor MYB1 [Source:UniProtKB/Swiss-Prot;Acc:Q42575]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.