Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005006.1-P | Field mustard | nucleus | 88.59 | 81.91 |
| CDX74825 | Canola | nucleus | 88.86 | 81.55 |
| CDX72208 | Canola | nucleus | 49.46 | 49.46 |
| CDY27271 | Canola | nucleus | 49.18 | 48.53 |
| AT2G39880.1 | Thale cress | nucleus | 42.93 | 43.05 |
| VIT_13s0019g03200.t01 | Wine grape | nucleus | 41.85 | 40.74 |
| GSMUA_Achr9P03720_001 | Banana | nucleus | 35.33 | 40.37 |
| CDX83109 | Canola | nucleus | 17.66 | 40.12 |
| Solyc05g052850.2.1 | Tomato | nucleus | 40.22 | 39.57 |
| GSMUA_Achr6P33470_001 | Banana | nucleus | 23.91 | 39.11 |
| PGSC0003DMT400069921 | Potato | nucleus | 39.67 | 39.04 |
| CDX73963 | Canola | nucleus | 33.97 | 37.31 |
| KRH15016 | Soybean | nucleus | 39.67 | 37.15 |
| CDY07907 | Canola | nucleus | 33.15 | 36.75 |
| CDY35992 | Canola | nucleus | 15.22 | 35.67 |
| CDY21728 | Canola | nucleus | 14.67 | 34.39 |
| CDY12830 | Canola | nucleus | 22.83 | 33.2 |
| CDY22442 | Canola | nucleus | 24.18 | 32.36 |
| KRH73115 | Soybean | nucleus | 35.05 | 32.33 |
| CDY01420 | Canola | nucleus | 23.1 | 32.32 |
| CDX75635 | Canola | nucleus | 25.82 | 31.77 |
| CDY44045 | Canola | nucleus | 24.46 | 31.58 |
| OQU87862 | Sorghum | nucleus | 34.24 | 31.58 |
| CDX83880 | Canola | nucleus | 15.49 | 31.32 |
| CDX69287 | Canola | nucleus | 25.82 | 31.05 |
| CDY29542 | Canola | nucleus | 22.28 | 30.94 |
| CDX72621 | Canola | nucleus | 22.28 | 30.94 |
| CDY38933 | Canola | nucleus | 24.46 | 30.82 |
| Os01t0850400-01 | Rice | nucleus | 34.51 | 30.75 |
| CDX89554 | Canola | nucleus | 24.18 | 30.38 |
| Zm00001d012379_P001 | Maize | nucleus | 32.88 | 30.17 |
| CDY23023 | Canola | nucleus | 23.37 | 29.66 |
| CDY57355 | Canola | nucleus | 22.28 | 29.5 |
| CDY02098 | Canola | nucleus | 23.37 | 29.35 |
| CDY30608 | Canola | nucleus | 20.92 | 29.06 |
| CDY70773 | Canola | nucleus | 22.28 | 28.67 |
| CDY70901 | Canola | nucleus | 22.28 | 28.67 |
| CDY43567 | Canola | nucleus | 16.03 | 27.19 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 33.97 | 27.06 |
| CDY58312 | Canola | nucleus | 17.12 | 26.92 |
| TraesCS3B01G397100.1 | Wheat | nucleus | 33.97 | 26.71 |
| TraesCS3D01G358400.1 | Wheat | nucleus | 33.97 | 26.65 |
| CDX82074 | Canola | nucleus | 16.85 | 26.61 |
| CDX72988 | Canola | nucleus | 16.3 | 26.55 |
| CDX96475 | Canola | nucleus | 16.3 | 26.32 |
| HORVU3Hr1G085570.1 | Barley | plastid | 32.88 | 26.25 |
| CDX72405 | Canola | nucleus | 16.58 | 25.31 |
| CDY71713 | Canola | nucleus | 15.76 | 25.22 |
| CDX96742 | Canola | nucleus | 16.58 | 25.21 |
| GSMUA_Achr5P28780_001 | Banana | nucleus | 27.17 | 25.19 |
| CDY46114 | Canola | nucleus | 16.3 | 24.9 |
| CDX68566 | Canola | nucleus | 20.92 | 24.52 |
| CDX68977 | Canola | nucleus | 16.58 | 24.4 |
| CDX75353 | Canola | nucleus | 16.58 | 24.3 |
| CDY30264 | Canola | nucleus | 17.12 | 24.23 |
| CDY21727 | Canola | nucleus | 16.3 | 23.9 |
| CDY28302 | Canola | nucleus | 16.3 | 23.9 |
| CDX81853 | Canola | nucleus | 16.03 | 23.89 |
| CDY44415 | Canola | nucleus | 16.58 | 23.37 |
| CDY67808 | Canola | nucleus | 10.05 | 23.27 |
| CDY40941 | Canola | nucleus | 20.11 | 23.12 |
| CDX95921 | Canola | nucleus | 19.57 | 22.5 |
| CDY07345 | Canola | nucleus | 18.21 | 22.48 |
| CDY67868 | Canola | nucleus | 18.21 | 22.48 |
| CDY20004 | Canola | nucleus | 17.39 | 22.3 |
| CDY66025 | Canola | nucleus | 17.39 | 22.22 |
| CDX78761 | Canola | nucleus | 18.48 | 21.73 |
| CDX70776 | Canola | nucleus | 18.48 | 21.73 |
| CDY69058 | Canola | nucleus | 15.49 | 21.59 |
| CDY16884 | Canola | nucleus | 17.93 | 21.15 |
| CDY38460 | Canola | nucleus | 18.48 | 20.99 |
| CDY02687 | Canola | nucleus | 17.39 | 20.65 |
| CDY50737 | Canola | nucleus | 19.29 | 20.64 |
| CDX85443 | Canola | nucleus | 17.12 | 20.52 |
| CDY44993 | Canola | nucleus | 19.57 | 20.4 |
| CDY46444 | Canola | nucleus | 19.02 | 19.83 |
| CDY66170 | Canola | nucleus | 16.85 | 19.75 |
| CDX74436 | Canola | nucleus | 17.12 | 17.45 |
| CDX83108 | Canola | cytosol | 0.82 | 7.69 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078G550 | UniProt:A0A078G550 | EnsemblPlants:CDY20494 | ProteinID:CDY20494 |
| ProteinID:CDY20494.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00012594001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF524 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEBD4C | SEG:seg |
Description
BnaC04g05500DBnaC04g05500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G550]
Coordinates
chrLK032108:-:490155..491503
Molecular Weight (calculated)
40492.0 Da
IEP (calculated)
8.872
GRAVY (calculated)
-0.544
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSEIVSQMP PATPSTPFDD SSEYAINAAV DLELALAVRE VGGDSNGGCG RSKAKGPWST EQDAVLTRLV NKLGPRNWTL ISRGIPGRSG KSCRLRWCNQ
101: LDPCLKRKPF TDEEENLLMS AHAVHGNKWS VIAKLLPGRT DNAIKNHWNS ALKRKHADLW NSHHHSISNA SSSRKEETNY HPPLVSTDVK MEGEASKTRE
201: GKCCKPGVYR PVARLGAFSV YKPGYMNQRV APCEGPLVQA AGTDSLGGQF LQSLCYQPNV PSRCGHGCCN QQPEKRLLSS VLGPEFVDYE GPSIVGLDQE
301: LVSIATDLNN IAWIRSGLNN SYAREVGQRL NADSRFHFEH ARARGKFTGM VNNGMPSQML RQDLRALI
101: LDPCLKRKPF TDEEENLLMS AHAVHGNKWS VIAKLLPGRT DNAIKNHWNS ALKRKHADLW NSHHHSISNA SSSRKEETNY HPPLVSTDVK MEGEASKTRE
201: GKCCKPGVYR PVARLGAFSV YKPGYMNQRV APCEGPLVQA AGTDSLGGQF LQSLCYQPNV PSRCGHGCCN QQPEKRLLSS VLGPEFVDYE GPSIVGLDQE
301: LVSIATDLNN IAWIRSGLNN SYAREVGQRL NADSRFHFEH ARARGKFTGM VNNGMPSQML RQDLRALI
001: MNGEISRPPE LISSRNPCKS FENAIHKAVE AELAELAKSD ANGGGKSKVK GPWLPEQDEA LTRLVKMCGP RNWNLISRGI PGRSGKSCRL RWCNQLDPIL
101: KRKPFSDEEE HMIMSAQAVL GNKWSVIAKL LPGRTDNAIK NHWNSNLRRK PAEQWKIPLL MSNTEIVYQL YPSMVRRISN ASPKEHLPQE EETGVLSDDK
201: MDDEAKEPPR EQNSKTGVYR PVARMGAFSV CKPGYMAPCE GPLVQASRPD SLAGKFLQSL CYDPIIPSKC GHGCCNHQDS TTLSSSSVLG SEFVDYEEHS
301: SAELDKELIS ISNDLNNTAW IRSGKEAEQS LKADDQFRRE YAHSKFSGMV NNGVSSQMVR QDLRALS
101: KRKPFSDEEE HMIMSAQAVL GNKWSVIAKL LPGRTDNAIK NHWNSNLRRK PAEQWKIPLL MSNTEIVYQL YPSMVRRISN ASPKEHLPQE EETGVLSDDK
201: MDDEAKEPPR EQNSKTGVYR PVARMGAFSV CKPGYMAPCE GPLVQASRPD SLAGKFLQSL CYDPIIPSKC GHGCCNHQDS TTLSSSSVLG SEFVDYEEHS
301: SAELDKELIS ISNDLNNTAW IRSGKEAEQS LKADDQFRRE YAHSKFSGMV NNGVSSQMVR QDLRALS
Arabidopsis Description
MYB25Transcription factor MYB25 [Source:UniProtKB/Swiss-Prot;Acc:O04192]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.