Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85443 | Canola | nucleus | 94.52 | 95.44 |
| Bra023637.1-P | Field mustard | nucleus | 93.87 | 91.51 |
| CDY69058 | Canola | nucleus | 71.61 | 84.09 |
| CDY16884 | Canola | nucleus | 79.68 | 79.17 |
| CDY38460 | Canola | nucleus | 80.97 | 77.47 |
| AT5G17800.1 | Thale cress | nucleus | 78.39 | 75.23 |
| CDX78761 | Canola | nucleus | 74.19 | 73.48 |
| CDX70776 | Canola | nucleus | 73.23 | 72.52 |
| CDY35992 | Canola | nucleus | 28.06 | 55.41 |
| CDY21728 | Canola | nucleus | 26.77 | 52.87 |
| CDX83880 | Canola | nucleus | 28.06 | 47.8 |
| CDX96475 | Canola | nucleus | 32.26 | 43.86 |
| CDX72988 | Canola | nucleus | 31.61 | 43.36 |
| CDX82074 | Canola | nucleus | 31.94 | 42.49 |
| CDX96742 | Canola | nucleus | 32.9 | 42.15 |
| CDY58312 | Canola | nucleus | 31.61 | 41.88 |
| CDY21727 | Canola | nucleus | 33.23 | 41.04 |
| CDX81853 | Canola | nucleus | 32.26 | 40.49 |
| CDY67808 | Canola | nucleus | 19.68 | 38.36 |
| CDY71713 | Canola | nucleus | 27.74 | 37.39 |
| CDY30264 | Canola | nucleus | 30.65 | 36.54 |
| PGSC0003DMT400072258 | Potato | nucleus | 37.1 | 35.83 |
| CDX68977 | Canola | nucleus | 28.71 | 35.6 |
| CDX75353 | Canola | nucleus | 28.71 | 35.46 |
| Solyc10g081320.1.1 | Tomato | nucleus | 36.45 | 35.42 |
| CDY44415 | Canola | nucleus | 29.68 | 35.25 |
| CDX72405 | Canola | nucleus | 27.1 | 34.85 |
| CDY28302 | Canola | nucleus | 28.06 | 34.66 |
| CDY46114 | Canola | nucleus | 26.77 | 34.44 |
| CDY67868 | Canola | nucleus | 31.61 | 32.89 |
| CDY07345 | Canola | nucleus | 31.61 | 32.89 |
| KRG94926 | Soybean | nucleus | 39.68 | 32.54 |
| CDY20004 | Canola | nucleus | 30.0 | 32.4 |
| CDX95921 | Canola | nucleus | 33.23 | 32.19 |
| CDY40941 | Canola | nucleus | 33.23 | 32.19 |
| CDY66025 | Canola | nucleus | 29.68 | 31.94 |
| CDX83109 | Canola | nucleus | 16.45 | 31.48 |
| KRH64970 | Soybean | nucleus | 40.32 | 30.86 |
| CDY50737 | Canola | nucleus | 33.87 | 30.52 |
| CDY46444 | Canola | nucleus | 34.52 | 30.31 |
| CDY44993 | Canola | nucleus | 34.52 | 30.31 |
| CDY66170 | Canola | nucleus | 30.0 | 29.62 |
| VIT_08s0056g01190.t01 | Wine grape | golgi | 39.35 | 27.35 |
| CDX74436 | Canola | nucleus | 30.97 | 26.59 |
| CDY12830 | Canola | nucleus | 20.65 | 25.3 |
| CDY01420 | Canola | nucleus | 20.97 | 24.71 |
| CDX72621 | Canola | nucleus | 20.65 | 24.15 |
| CDY29542 | Canola | nucleus | 20.65 | 24.15 |
| CDY22442 | Canola | nucleus | 20.65 | 23.27 |
| CDX89554 | Canola | nucleus | 21.94 | 23.21 |
| CDY30608 | Canola | nucleus | 19.68 | 23.02 |
| CDY38933 | Canola | nucleus | 21.61 | 22.95 |
| CDY44045 | Canola | nucleus | 20.97 | 22.81 |
| CDX75635 | Canola | nucleus | 21.61 | 22.41 |
| CDY57355 | Canola | nucleus | 20.0 | 22.3 |
| CDX69287 | Canola | nucleus | 21.61 | 21.9 |
| CDY23023 | Canola | nucleus | 20.32 | 21.72 |
| CDY02098 | Canola | nucleus | 20.32 | 21.5 |
| CDX73963 | Canola | nucleus | 19.68 | 18.21 |
| CDY07907 | Canola | nucleus | 19.35 | 18.07 |
| CDY43567 | Canola | nucleus | 12.58 | 17.97 |
| CDX68566 | Canola | nucleus | 18.06 | 17.83 |
| CDY27271 | Canola | nucleus | 20.97 | 17.43 |
| CDY20494 | Canola | nucleus | 20.65 | 17.39 |
| CDX72208 | Canola | nucleus | 20.32 | 17.12 |
| CDX74825 | Canola | nucleus | 21.61 | 16.71 |
| CDY70901 | Canola | nucleus | 9.35 | 10.14 |
| CDY70773 | Canola | nucleus | 9.35 | 10.14 |
| CDX83108 | Canola | cytosol | 0.65 | 5.13 |
Protein Annotations
| EnsemblPlants:CDY02687 | EnsemblPlantsGene:GSBRNA2T00114833001 | Gene3D:1.10.10.60 | GO:A0A078ENJ5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF941 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY02687 | ProteinID:CDY02687.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEA9CB | MapMan:15.5.2.1 | : |
Description
BnaC02g07480D
Coordinates
chrLK031936:-:783507..785499
Molecular Weight (calculated)
35282.1 Da
IEP (calculated)
9.986
GRAVY (calculated)
-0.938
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPNLLEKDQ TSNETIHGSR RFKEANNFRS SPKSHTNFSL ARNHPLNKTF PVLKSEDEHE SENGWKRRGQ SGIKAKVCSR GHWRPTEDAK LKELVAEFGP
101: QNWNVIANHL LGRSGKSCRL RWFNQLDPRI NKTAFTEEEE LRLLAVHRAY GNKWALISRL FPGRTDNAVK NHWHVIMARR TRKSQRQRHQ PPQAPSGNAE
201: MAVSSSYNHG DEFFEDDEAG DDDGSTVSTC TTELSLTPPS STHQLRFFNY DSTLAPGKAG QCVQRAEVSG KYSKKLDHQN HHTITVSERK VEVKMKSGHY
301: FFDFLGVGAS
101: QNWNVIANHL LGRSGKSCRL RWFNQLDPRI NKTAFTEEEE LRLLAVHRAY GNKWALISRL FPGRTDNAVK NHWHVIMARR TRKSQRQRHQ PPQAPSGNAE
201: MAVSSSYNHG DEFFEDDEAG DDDGSTVSTC TTELSLTPPS STHQLRFFNY DSTLAPGKAG QCVQRAEVSG KYSKKLDHQN HHTITVSERK VEVKMKSGHY
301: FFDFLGVGAS
001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
Arabidopsis Description
MYB56Transcription factor MYB56 [Source:UniProtKB/Swiss-Prot;Acc:Q6R053]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.