Factsheet for PGSC0003DMT400072258

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081320.1.1	Tomato	nucleus	94.7	95.3
PGSC0003DMT400079714	Potato	nucleus	32.09	42.21
KRG94926	Soybean	nucleus	49.22	41.8
KRH64970	Soybean	nucleus	51.4	40.74
CDY16884	Canola	nucleus	37.38	38.46
Bra006422.1-P	Field mustard	nucleus	36.76	37.7
CDX78761	Canola	nucleus	36.76	37.7
CDY69058	Canola	nucleus	30.84	37.5
CDX85443	Canola	nucleus	35.83	37.46
CDX70776	Canola	nucleus	36.45	37.38
CDY38460	Canola	nucleus	37.69	37.35
AT5G17800.1	Thale cress	nucleus	37.38	37.15
CDY02687	Canola	nucleus	35.83	37.1
Bra002107.1-P	Field mustard	nucleus	37.38	37.04
Bra023637.1-P	Field mustard	nucleus	35.51	35.85
PGSC0003DMT400063862	Potato	nucleus	33.02	35.1
VIT_08s0056g01190.t01	Wine grape	golgi	42.68	30.72
PGSC0003DMT400047415	Potato	nucleus	40.81	30.54
PGSC0003DMT400020635	Potato	nucleus	19.94	25.5
PGSC0003DMT400008569	Potato	nucleus	20.56	20.62
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	22.43	19.41
PGSC0003DMT400052395	Potato	nucleus	21.81	18.47
PGSC0003DMT400069921	Potato	nucleus	19.94	17.11

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102601981	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1CPY7	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400028119	PGSC:PGSC0003DMG400028119	EnsemblPlants:PGSC0003DMT400072258	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF941
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000294DAC7	RefSeq:XP_006339216.1	SEG:seg

Description

MYB domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028119]

Coordinates

chr10:-:56625972..56628457

Molecular Weight (calculated)

36803.1 Da

IEP (calculated)

6.449

GRAVY (calculated)

-0.787

Length

321 amino acids

Sequence
(BLAST)

001: MNSGVGSCYV QEMNFLVPCV EENPWRLHQM ENKFKDEEEG LVDLIGIKET NHNNNNNING GTKLCSRGHW RPHEDAKLKE LVGQYGPQNW NLIAEKLEGR
101: SGKSCRLRWF NQLDPRINRK AFSEEEEERL LVAHKMYGNK WSMIARLFPG RTDNAVKNHW HVIMARKHRE QNSVYRRRKT SNLQQIIAPN NNNNINNDDD
201: MIIQSDSTIS SNIVDDLQSD STCTDLSLTP SSSKAIIHPF LKTRFNHHHV EHQGIIYSNK GLSRDEEEVK MGLYGNMSDT NSEISASESV ANNMTNIVKI
301: YEDEDDVKTV NFIDFLGVGA T

Best Arabidopsis Sequence Match ( AT1G69560.2 )
(BLAST)

001: MMFKVIFNIC SSPPMRMEMV HADVASLSIT PCFPSSLSSS SHHHYNQQQH CIMSEDQHHS MDQTTSSDYF SLNIDNAQHL RSYYTSHREE DMNPNLSDYS
101: NCNKKDTTVY RSCGHSSKAS VSRGHWRPAE DTKLKELVAV YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH RLYGNKWAMI
201: ARLFPGRTDN SVKNHWHVIM ARKFREQSSS YRRRKTMVSL KPLINPNPHI FNDFDPTRLA LTHLASSDHK QLMLPVPCFP GYDHENESPL MVDMFETQMM
301: VGDYIAWTQE ATTFDFLNQT GKSEIFERIN EEKKPPFFDF LGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.