Factsheet for PGSC0003DMT400008569

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078420.1.1	Tomato	nucleus	95.62	93.29
VIT_18s0001g09850.t01	Wine grape	nucleus	61.25	62.62
VIT_07s0129g01050.t01	Wine grape	nucleus	57.81	59.29
KRH28419	Soybean	nucleus	53.75	57.91
KRH77058	Soybean	nucleus	55.0	57.7
KRH57983	Soybean	nucleus	51.25	55.59
Zm00001d005300_P001	Maize	nucleus	49.38	55.44
Os09t0106700-01	Rice	nucleus	52.81	52.98
TraesCS5B01G157300.1	Wheat	nucleus	52.81	50.45
CDY29542	Canola	nucleus	41.56	50.19
Bra017813.1-P	Field mustard	nucleus	41.56	50.19
TraesCS5A01G159600.1	Wheat	nucleus	52.5	50.0
CDX72621	Canola	nucleus	41.25	49.81
Zm00001d019712_P001	Maize	nucleus	52.81	48.99
TraesCS5D01G164600.1	Wheat	nucleus	51.88	48.4
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	54.69	47.17
EER98550	Sorghum	nucleus	53.44	46.72
PGSC0003DMT400020635	Potato	nucleus	33.12	42.23
HORVU5Hr1G049880.1	Barley	plastid	51.25	38.68
PGSC0003DMT400052395	Potato	nucleus	31.56	26.65
PGSC0003DMT400079714	Potato	nucleus	19.69	25.82
PGSC0003DMT400069921	Potato	nucleus	28.12	24.06
PGSC0003DMT400063862	Potato	nucleus	20.94	22.19
PGSC0003DMT400072258	Potato	nucleus	20.62	20.56
PGSC0003DMT400047415	Potato	nucleus	21.25	15.85

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102581745	MapMan:15.5.2.1	ProteinID:AAG08960	ProteinID:AAG08960.1	EMBL:AF122052
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:M0ZUS0	InterPro:Myb_dom	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400003316	PGSC:PGSC0003DMG400003316	EnsemblPlants:PGSC0003DMT400008569
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000295AAC9	RefSeq:XP_006367421.1	SEG:seg	:	:	:

Description

Tuber-specific and sucrose-responsive element binding factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003316]

Coordinates

chr4:-:67630129..67631587

Molecular Weight (calculated)

35021.9 Da

IEP (calculated)

9.496

GRAVY (calculated)

-0.546

Length

320 amino acids

Sequence
(BLAST)

001: MAAITQRKDS DRIKGPWSPE EDELLQTLVE KHGPRNWTLI SKSVPGRSGK SCRLRWCNQL SPQVEHRAFT PEEDDTIIRA HAKYGNKWAT IARLLSGRTD
101: NAIKNHWNST LKRKCPSMSE DLSFETPQPP LKRSSSVGPC TNFSSVMNPG SPSGSDLSDS SLSGFPQPLV YRPVPRTGGI FPLPPPPPPV KQIEIPSSVP
201: DPPTSLCLSL PGSGSIEKPT QSPNSPPLPP PPLPVVDKPI PPSAAVMGHL PRSNQSYDFC AAPKSGEKQF FTPEFLSVLQ GMIRKEVKSY MSGFEQNGIC
301: MQTDAIRNAV IKRIGISKIE

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.