Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G159600.1 | Wheat | nucleus | 97.01 | 96.73 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 96.72 | 94.46 |
| Os09t0106700-01 | Rice | nucleus | 71.94 | 75.55 |
| Zm00001d005300_P001 | Maize | nucleus | 61.49 | 72.28 |
| Zm00001d019712_P001 | Maize | nucleus | 72.84 | 70.72 |
| EER98550 | Sorghum | nucleus | 77.01 | 70.49 |
| HORVU5Hr1G049880.1 | Barley | plastid | 88.96 | 70.28 |
| KRH05621 | Soybean | nucleus | 48.06 | 60.07 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 47.76 | 59.48 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 53.73 | 57.69 |
| KRH61351 | Soybean | nucleus | 43.28 | 55.98 |
| KRH57983 | Soybean | nucleus | 48.66 | 55.25 |
| KRH15420 | Soybean | nucleus | 44.78 | 54.95 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 47.46 | 54.83 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 45.67 | 54.26 |
| KRH28419 | Soybean | nucleus | 47.76 | 53.87 |
| CDY22442 | Canola | nucleus | 44.18 | 53.82 |
| VIT_18s0001g09850.t01 | Wine grape | nucleus | 49.55 | 53.04 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 46.87 | 52.86 |
| PGSC0003DMT400008569 | Potato | nucleus | 50.45 | 52.81 |
| KRH77058 | Soybean | nucleus | 48.06 | 52.79 |
| Bra032176.1-P | Field mustard | nucleus | 45.67 | 52.4 |
| CDY38933 | Canola | nucleus | 45.67 | 52.4 |
| Solyc04g078420.1.1 | Tomato | nucleus | 51.04 | 52.13 |
| CDY44045 | Canola | nucleus | 44.18 | 51.93 |
| CDX89554 | Canola | nucleus | 45.07 | 51.54 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 46.27 | 51.32 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 43.88 | 51.04 |
| CDX75635 | Canola | nucleus | 45.37 | 50.84 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 45.97 | 50.83 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 44.48 | 50.34 |
| CDY12830 | Canola | nucleus | 37.91 | 50.2 |
| Bra012149.1-P | Field mustard | nucleus | 44.18 | 50.0 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 39.7 | 50.0 |
| TraesCS6B01G201700.1 | Wheat | nucleus | 43.58 | 49.83 |
| CDY29542 | Canola | nucleus | 39.4 | 49.81 |
| Bra017813.1-P | Field mustard | nucleus | 39.4 | 49.81 |
| CDX69287 | Canola | nucleus | 45.37 | 49.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.79 | 49.47 |
| CDX72621 | Canola | nucleus | 39.1 | 49.43 |
| CDY23023 | Canola | nucleus | 42.39 | 48.97 |
| CDY01420 | Canola | nucleus | 38.21 | 48.67 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 41.79 | 48.61 |
| Bra010593.1-P | Field mustard | nucleus | 44.18 | 48.52 |
| TraesCS7B01G444000.1 | Wheat | nucleus | 41.49 | 48.26 |
| Bra012910.1-P | Field mustard | nucleus | 41.79 | 47.78 |
| CDY02098 | Canola | nucleus | 41.79 | 47.78 |
| AT2G23290.1 | Thale cress | nucleus | 43.88 | 47.57 |
| AT5G67300.1 | Thale cress | nucleus | 42.99 | 47.21 |
| Solyc02g092930.1.1 | Tomato | nucleus | 50.45 | 46.81 |
| TraesCS7B01G443800.1 | Wheat | nucleus | 41.19 | 46.78 |
| CDY57355 | Canola | nucleus | 38.81 | 46.76 |
| Bra011749.1-P | Field mustard | nucleus | 45.67 | 46.65 |
| Bra036048.1-P | Field mustard | nucleus | 37.01 | 46.62 |
| CDY30608 | Canola | nucleus | 36.72 | 46.42 |
| PGSC0003DMT400064306 | Potato | mitochondrion, nucleus | 51.34 | 46.36 |
| AT4G37260.1 | Thale cress | nucleus | 44.18 | 46.25 |
| TraesCS7B01G443900.1 | Wheat | nucleus | 40.9 | 45.97 |
| AT3G50060.1 | Thale cress | nucleus | 40.9 | 45.51 |
| Bra029990.1-P | Field mustard | nucleus | 38.81 | 44.22 |
| CDX68566 | Canola | nucleus | 34.33 | 36.62 |
| TraesCS4B01G299000.1 | Wheat | nucleus | 26.87 | 34.75 |
| TraesCS1B01G236900.1 | Wheat | nucleus | 30.75 | 33.99 |
| TraesCS3B01G217100.1 | Wheat | nucleus | 23.58 | 25.24 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 18.51 | 24.9 |
| TraesCS4B01G105200.1 | Wheat | nucleus | 19.7 | 24.0 |
| TraesCS3B01G397100.1 | Wheat | nucleus | 29.55 | 21.15 |
| TraesCS3B01G473600.1 | Wheat | nucleus | 19.7 | 18.64 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G157300.1 | EnsemblPlantsGene:TraesCS5B01G157300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF940 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:289796695..289797910
Molecular Weight (calculated)
35801.5 Da
IEP (calculated)
9.535
GRAVY (calculated)
-0.639
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MAACRGGGGG KDVDRIKGPW SPEEDDALQR LVGRHGARNW SLISKSIPGR SGKSCRLRWC NQLSPQVEHR PFTPDEDDTI LRAHARFGNK WATIARLLSG
101: RTDNAIKNHW NSTLKRKYSS SSSASASPAE DGAAMADDED RRPLKRTSSD GYPGLCFSPG SPSGSDLSDS SHQSLPSVMP SAASQQPHVY RPVARAGGVV
201: VLPTATPQPP QPSPPSPPPP PPPPATSLSL SLSLPGLDAP EPAPVAQPMS MPPPPAPVQP AAAPQMPPPP PMPFQLQPPP QPQPRTAAPF NGEFLSMMQE
301: MIRIEVRNYM SGFDPRSPAD GVHAAKRMMS MAKIE
101: RTDNAIKNHW NSTLKRKYSS SSSASASPAE DGAAMADDED RRPLKRTSSD GYPGLCFSPG SPSGSDLSDS SHQSLPSVMP SAASQQPHVY RPVARAGGVV
201: VLPTATPQPP QPSPPSPPPP PPPPATSLSL SLSLPGLDAP EPAPVAQPMS MPPPPAPVQP AAAPQMPPPP PMPFQLQPPP QPQPRTAAPF NGEFLSMMQE
301: MIRIEVRNYM SGFDPRSPAD GVHAAKRMMS MAKIE
001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
Arabidopsis Description
AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.