Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G160800.1 | Wheat | nucleus | 99.25 | 99.16 |
| TraesCS7B01G065800.2 | Wheat | plastid | 98.22 | 96.76 |
| HORVU7Hr1G033820.5 | Barley | nucleus | 93.71 | 93.62 |
| Os06t0196700-02 | Rice | nucleus | 86.76 | 87.58 |
| KXG19536 | Sorghum | nucleus | 84.41 | 85.38 |
| Zm00001d045026_P002 | Maize | nucleus | 83.57 | 84.52 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 35.21 | 60.48 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 46.85 | 58.43 |
| CDX83778 | Canola | nucleus | 50.61 | 52.84 |
| CDX96672 | Canola | nucleus | 50.05 | 52.25 |
| Bra016517.1-P | Field mustard | nucleus | 49.2 | 51.88 |
| CDY26690 | Canola | nucleus | 50.61 | 51.38 |
| Bra025720.1-P | Field mustard | nucleus | 50.61 | 51.38 |
| CDY41030 | Canola | nucleus | 50.8 | 51.13 |
| KRH37536 | Soybean | nucleus | 53.99 | 51.11 |
| AT1G19220.1 | Thale cress | nucleus | 52.02 | 51.01 |
| KRH12587 | Soybean | nucleus | 53.62 | 50.89 |
| VIT_11s0016g00640.t01 | Wine grape | nucleus | 54.74 | 50.48 |
| KRH02575 | Soybean | nucleus | 53.33 | 50.0 |
| KRH19355 | Soybean | nucleus | 52.96 | 49.87 |
| Solyc07g042260.2.1 | Tomato | nucleus | 52.77 | 49.43 |
| CDX92437 | Canola | nucleus | 48.26 | 49.42 |
| PGSC0003DMT400006151 | Potato | nucleus | 52.68 | 48.49 |
| TraesCS2D01G548900.1 | Wheat | nucleus | 37.84 | 48.38 |
| Bra020125.1-P | Field mustard | nucleus | 49.86 | 48.27 |
| TraesCS7D01G449900.2 | Wheat | nucleus | 40.94 | 48.02 |
| AT5G20730.1 | Thale cress | nucleus | 51.08 | 46.7 |
| CDY45069 | Canola | nucleus | 48.73 | 46.63 |
| CDY16560 | Canola | nucleus | 45.54 | 46.55 |
| TraesCS6D01G127600.2 | Wheat | nucleus | 39.62 | 45.52 |
| TraesCS5D01G045700.2 | Wheat | nucleus | 38.03 | 45.0 |
| TraesCS7D01G250100.4 | Wheat | nucleus | 43.47 | 42.4 |
| TraesCS6D01G102300.1 | Wheat | nucleus | 44.88 | 42.34 |
| TraesCS7D01G409700.1 | Wheat | nucleus | 45.45 | 41.19 |
| Bra002327.1-P | Field mustard | nucleus | 49.11 | 36.34 |
| TraesCS2D01G491200.2 | Wheat | nucleus | 32.21 | 35.92 |
| TraesCS2D01G307600.1 | Wheat | nucleus | 21.97 | 35.78 |
| TraesCS3D01G434700.1 | Wheat | nucleus | 24.69 | 33.04 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 21.22 | 29.82 |
| TraesCS3D01G442000.7 | Wheat | nucleus | 24.69 | 29.68 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom |
| PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF21 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS7D01G161900 | EnsemblPlants:TraesCS7D01G161900.1 |
| TIGR:cd10017 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:112046247..112052092
Molecular Weight (calculated)
118381.0 Da
IEP (calculated)
6.421
GRAVY (calculated)
-0.596
Length
1065 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKDQGSAGVS PGPPEGEKKA INSELWHACS GPLVAMPPVG SLVVYFPQGH SEQVAASMHK EVDIIPNYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ
0101: PVNKYDRDAM LASELGLKQN KQPVEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELMAK DLHDIPWKFR HIFRGQPKRH LLTTGWSVFV
0201: STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML
0301: FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDEGEVDSA FKRAMPWLGD
0401: DFALKDVQSQ LFPGLSLVQW MAMQQNPQML PAGAPAVQAP YLNSSAMAMQ DGMGTGNDDL MRRFNMQGQN IGLPNSQVGS KMDHPAMAQH QQQSHQLQQQ
0501: QQVQQSQQSS AVQQQQAQLL QQNAIHLQQQ QEHLQRQQSL PQQQQEHLQR QQSQPQQQLK TAASMPSMEQ HKLREQQPQG GQAVSQAQML SQIFQPSSSQ
0601: LQQLGLPKSP TQRPGFPGLP TASSLQQPAL GQAPQVQQAA EYQQALLQSQ QQQLQQLSQP EMQLQLLQKI QQQNMLSQLN PQHQSQLMQQ LSQKNQEYLQ
0701: QQILQHQLSG SDAMVQFKQS HQTPSNNITG SLTPQQLVRS HSALAESEDP SSSTAPSASR LSPMNSLSRT HQGSRNLTDM TTSPHIDNLL QEIQSKPDNR
0801: NKNDMQSSKE AIPVPNRYPV SDQLDASSAT SFCLDESPRE GFSFPPVCLD SNAQVDPRDN FLIAENVDSL MPDALLSRGM GSGKDICNLP SGQRDHREVD
0901: NELSSAAFSS QSFGVPDISF KPGCSGDIAV NDGGMPSQGL WNNQTQRMRT FTKVQKRGSV GRSIDITRYT NYDELRHDLA CMFGIQGQLE DPYRMDWKLV
1001: YVDHENDILL VGDDPWEEFV SCVKSIKILS SVEVQQMSLD GDLGGIPSQT QACSASDDAN AWRGS
0101: PVNKYDRDAM LASELGLKQN KQPVEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELMAK DLHDIPWKFR HIFRGQPKRH LLTTGWSVFV
0201: STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML
0301: FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGM PDDEGEVDSA FKRAMPWLGD
0401: DFALKDVQSQ LFPGLSLVQW MAMQQNPQML PAGAPAVQAP YLNSSAMAMQ DGMGTGNDDL MRRFNMQGQN IGLPNSQVGS KMDHPAMAQH QQQSHQLQQQ
0501: QQVQQSQQSS AVQQQQAQLL QQNAIHLQQQ QEHLQRQQSL PQQQQEHLQR QQSQPQQQLK TAASMPSMEQ HKLREQQPQG GQAVSQAQML SQIFQPSSSQ
0601: LQQLGLPKSP TQRPGFPGLP TASSLQQPAL GQAPQVQQAA EYQQALLQSQ QQQLQQLSQP EMQLQLLQKI QQQNMLSQLN PQHQSQLMQQ LSQKNQEYLQ
0701: QQILQHQLSG SDAMVQFKQS HQTPSNNITG SLTPQQLVRS HSALAESEDP SSSTAPSASR LSPMNSLSRT HQGSRNLTDM TTSPHIDNLL QEIQSKPDNR
0801: NKNDMQSSKE AIPVPNRYPV SDQLDASSAT SFCLDESPRE GFSFPPVCLD SNAQVDPRDN FLIAENVDSL MPDALLSRGM GSGKDICNLP SGQRDHREVD
0901: NELSSAAFSS QSFGVPDISF KPGCSGDIAV NDGGMPSQGL WNNQTQRMRT FTKVQKRGSV GRSIDITRYT NYDELRHDLA CMFGIQGQLE DPYRMDWKLV
1001: YVDHENDILL VGDDPWEEFV SCVKSIKILS SVEVQQMSLD GDLGGIPSQT QACSASDDAN AWRGS
0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR
Arabidopsis Description
NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.