Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G161900.1 | Wheat | nucleus | 93.62 | 93.71 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 93.15 | 93.15 |
| TraesCS7B01G065800.2 | Wheat | plastid | 93.9 | 92.6 |
| Os06t0196700-02 | Rice | nucleus | 82.55 | 83.41 |
| KXG19536 | Sorghum | nucleus | 81.05 | 82.05 |
| Zm00001d045026_P002 | Maize | nucleus | 80.11 | 81.1 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 34.24 | 58.87 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 46.06 | 57.49 |
| CDX83778 | Canola | nucleus | 49.25 | 51.47 |
| CDX96672 | Canola | nucleus | 48.78 | 50.98 |
| Bra016517.1-P | Field mustard | nucleus | 47.94 | 50.59 |
| Bra025720.1-P | Field mustard | nucleus | 49.25 | 50.05 |
| CDY26690 | Canola | nucleus | 49.25 | 50.05 |
| CDY41030 | Canola | nucleus | 49.25 | 49.62 |
| KRH37536 | Soybean | nucleus | 52.25 | 49.51 |
| AT1G19220.1 | Thale cress | nucleus | 50.09 | 49.17 |
| KRH12587 | Soybean | nucleus | 51.59 | 49.02 |
| VIT_11s0016g00640.t01 | Wine grape | nucleus | 52.53 | 48.48 |
| KRH19355 | Soybean | nucleus | 51.13 | 48.19 |
| CDX92437 | Canola | nucleus | 47.0 | 48.17 |
| KRH02575 | Soybean | nucleus | 51.31 | 48.15 |
| Solyc07g042260.2.1 | Tomato | nucleus | 51.03 | 47.85 |
| PGSC0003DMT400006151 | Potato | nucleus | 50.84 | 46.85 |
| HORVU2Hr1G121110.32 | Barley | nucleus | 36.68 | 46.66 |
| Bra020125.1-P | Field mustard | nucleus | 47.56 | 46.09 |
| CDY16560 | Canola | nucleus | 44.18 | 45.2 |
| CDY45069 | Canola | nucleus | 47.09 | 45.1 |
| AT5G20730.1 | Thale cress | nucleus | 48.97 | 44.81 |
| HORVU7Hr1G106280.1 | Barley | nucleus | 39.4 | 44.78 |
| HORVU5Hr1G009650.20 | Barley | nucleus | 36.59 | 43.77 |
| HORVU6Hr1G026730.9 | Barley | nucleus | 37.8 | 43.38 |
| HORVU7Hr1G051930.4 | Barley | nucleus | 42.21 | 41.55 |
| HORVU6Hr1G020330.30 | Barley | nucleus | 43.81 | 40.93 |
| HORVU7Hr1G096460.7 | Barley | mitochondrion, nucleus, vacuole | 44.37 | 39.35 |
| HORVU2Hr1G109650.18 | Barley | nucleus | 31.52 | 35.11 |
| HORVU2Hr1G076920.3 | Barley | nucleus | 21.76 | 34.73 |
| Bra002327.1-P | Field mustard | nucleus | 46.62 | 34.54 |
| HORVU3Hr1G097200.10 | Barley | nucleus | 24.02 | 30.3 |
| HORVU3Hr1G096410.4 | Barley | nucleus, plastid | 22.33 | 29.6 |
| HORVU3Hr1G096510.3 | Barley | plastid | 22.33 | 28.54 |
| HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 21.11 | 28.12 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | UniProt:A0A287VZV7 | InterPro:AUX/IAA_dom |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:HORVU7Hr1G033820 | EnsemblPlants:HORVU7Hr1G033820.5 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF21 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI000B479E04 |
| SEG:seg | : | : | : | : | : |
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287VZV7]
Coordinates
chrchr7H:-:69933339..69939477
Molecular Weight (calculated)
114373.0 Da
IEP (calculated)
6.543
GRAVY (calculated)
-0.551
Length
1066 amino acids
Sequence
(BLAST)
(BLAST)
0001: DGCTVSNHWP RFCKAGEKKA INSELWHACS GPLVAMPPVG SLVVYFPQGH SEQVAASMHK EVDIIPNYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ
0101: PVNKYDRDAM LASELGLKQN KQPVEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELMAK DLHDIPWKFR HIFRGQPKRH LLTTGWSVFV
0201: STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML
0301: FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGX XXDESEVDSA FKRAMPWLGD
0401: DFALKDVQSQ LFPGLSLVQW MAMQQNPQML PAGAPAVQAP YLNSSTMGMQ DGMGTGNEDL MRRFNMQGQN IGLPNIQAGS KMDNPAMAQH QQQXXXXXXX
0501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXQ QQEHLQRQQS LPQQQQEHLQ RQQSQPQQQL KTAASMPSME QHKLREQQPQ GGQAVSQAQM LSQIFQPSSS
0601: QLQQLGLPKS PTQRPGFPGL PTACSLQQPA LGQAPQVQQA AEYQQALLQS QQQQLQQLSQ PEMQLQLLQK IQQQNMLSQL NPQHQSQLMQ QLSQKNQEYL
0701: QQQILQHQLS GSDAMIQFKQ SHQTPSNNIS GSLTPQQLVR SHSALAESED PSSSTAPSAS RLSPMNSLSR THQGSRNLTD MTTSPHIDNL LQEIQSKPDN
0801: RNKNDMQSSK ETIPVPSRYP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DSNPQVDPRD NFLIAENVDS LMPDALLSRG MGSGKDICNL PAGQRDHREV
0901: DNELSSAAFS SQSFGVPDMS FKPGCSGDIA VNDGGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY TNYDELRHDL ACMFGIQGQL EDPYRMDWKL
1001: VYVDHENDIL LVGDDPWEEF VSCVKSIKIL SSVEVQQMSL DGDLGGIPPQ TQACSASDDA NAWRGS
0101: PVNKYDRDAM LASELGLKQN KQPVEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELMAK DLHDIPWKFR HIFRGQPKRH LLTTGWSVFV
0201: STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML
0301: FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT PFYICPPPFF RPKLPKQPGX XXDESEVDSA FKRAMPWLGD
0401: DFALKDVQSQ LFPGLSLVQW MAMQQNPQML PAGAPAVQAP YLNSSTMGMQ DGMGTGNEDL MRRFNMQGQN IGLPNIQAGS KMDNPAMAQH QQQXXXXXXX
0501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXQ QQEHLQRQQS LPQQQQEHLQ RQQSQPQQQL KTAASMPSME QHKLREQQPQ GGQAVSQAQM LSQIFQPSSS
0601: QLQQLGLPKS PTQRPGFPGL PTACSLQQPA LGQAPQVQQA AEYQQALLQS QQQQLQQLSQ PEMQLQLLQK IQQQNMLSQL NPQHQSQLMQ QLSQKNQEYL
0701: QQQILQHQLS GSDAMIQFKQ SHQTPSNNIS GSLTPQQLVR SHSALAESED PSSSTAPSAS RLSPMNSLSR THQGSRNLTD MTTSPHIDNL LQEIQSKPDN
0801: RNKNDMQSSK ETIPVPSRYP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DSNPQVDPRD NFLIAENVDS LMPDALLSRG MGSGKDICNL PAGQRDHREV
0901: DNELSSAAFS SQSFGVPDMS FKPGCSGDIA VNDGGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY TNYDELRHDL ACMFGIQGQL EDPYRMDWKL
1001: VYVDHENDIL LVGDDPWEEF VSCVKSIKIL SSVEVQQMSL DGDLGGIPPQ TQACSASDDA NAWRGS
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.