Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra025720.1-P | Field mustard | nucleus | 97.45 | 98.28 |
CDY26690 | Canola | nucleus | 97.45 | 98.28 |
CDX96672 | Canola | nucleus | 87.24 | 90.49 |
CDX83778 | Canola | nucleus | 86.39 | 89.61 |
AT1G19220.1 | Thale cress | nucleus | 88.94 | 86.65 |
KRH37536 | Soybean | nucleus | 65.5 | 61.6 |
KRH12587 | Soybean | nucleus | 64.93 | 61.23 |
KRH19355 | Soybean | nucleus | 64.74 | 60.57 |
VIT_11s0016g00640.t01 | Wine grape | nucleus | 65.88 | 60.35 |
KRH02575 | Soybean | nucleus | 64.74 | 60.3 |
GSMUA_Achr3P10240_001 | Banana | nucleus | 34.78 | 59.35 |
CDX92437 | Canola | nucleus | 57.84 | 58.85 |
Solyc07g042260.2.1 | Tomato | nucleus | 63.14 | 58.75 |
PGSC0003DMT400006151 | Potato | nucleus | 63.04 | 57.65 |
CDY45069 | Canola | nucleus | 59.83 | 56.87 |
GSMUA_Achr9P18170_001 | Banana | nucleus | 45.75 | 56.67 |
CDY16560 | Canola | nucleus | 53.78 | 54.61 |
Os06t0196700-02 | Rice | nucleus | 50.95 | 51.09 |
TraesCS7A01G160800.1 | Wheat | nucleus | 51.32 | 50.94 |
TraesCS7D01G161900.1 | Wheat | nucleus | 51.13 | 50.8 |
KXG19536 | Sorghum | nucleus | 49.91 | 50.14 |
Zm00001d045026_P002 | Maize | nucleus | 49.81 | 50.05 |
TraesCS7B01G065800.2 | Wheat | plastid | 50.85 | 49.77 |
HORVU7Hr1G033820.5 | Barley | nucleus | 49.62 | 49.25 |
CDY09598 | Canola | nucleus | 37.33 | 45.4 |
CDY02285 | Canola | nucleus | 37.43 | 45.36 |
CDY12048 | Canola | nucleus | 36.11 | 45.1 |
CDX90245 | Canola | nucleus | 36.29 | 45.07 |
CDY07460 | Canola | nucleus | 32.33 | 43.79 |
CDY53537 | Canola | nucleus | 33.65 | 43.73 |
CDY39274 | Canola | nucleus | 32.14 | 43.65 |
CDX74594 | Canola | nucleus | 33.65 | 43.47 |
CDY62586 | Canola | nucleus | 33.36 | 41.73 |
CDX83741 | Canola | nucleus | 33.27 | 41.61 |
CDY61164 | Canola | nucleus | 32.89 | 40.42 |
CDY01393 | Canola | nucleus | 32.89 | 40.23 |
CDY29392 | Canola | nucleus | 32.8 | 39.61 |
CDY39348 | Canola | nucleus | 32.51 | 39.14 |
CDY27291 | Canola | nucleus | 22.87 | 39.1 |
CDY47607 | Canola | nucleus | 21.74 | 38.08 |
CDX80025 | Canola | nucleus | 20.89 | 37.84 |
CDX95705 | Canola | nucleus | 19.19 | 37.25 |
CDY10978 | Canola | nucleus | 21.93 | 37.12 |
CDY50434 | Canola | nucleus | 21.93 | 37.12 |
CDY67714 | Canola | nucleus | 18.62 | 37.1 |
CDY69758 | Canola | nucleus | 14.56 | 37.02 |
CDY03502 | Canola | nucleus | 20.79 | 36.67 |
CDY65065 | Canola | nucleus | 22.68 | 36.31 |
CDY33603 | Canola | nucleus | 22.59 | 36.16 |
CDY48583 | Canola | nucleus | 18.62 | 36.01 |
CDY21993 | Canola | nucleus | 18.53 | 35.96 |
CDX94748 | Canola | endoplasmic reticulum, vacuole | 11.53 | 32.97 |
CDY31545 | Canola | nucleus | 23.35 | 32.63 |
CDY41720 | Canola | nucleus | 16.73 | 32.18 |
CDX80168 | Canola | nucleus | 22.97 | 32.02 |
CDY53570 | Canola | nucleus | 15.12 | 31.94 |
CDX86939 | Canola | nucleus | 25.61 | 31.88 |
CDY00245 | Canola | nucleus | 25.61 | 31.84 |
CDX87230 | Canola | nucleus | 24.86 | 31.76 |
CDY36940 | Canola | nucleus | 16.35 | 31.23 |
CDY67247 | Canola | nucleus | 25.05 | 31.14 |
CDY49005 | Canola | nucleus | 16.26 | 30.88 |
CDX94777 | Canola | nucleus | 16.26 | 30.88 |
CDY24168 | Canola | nucleus | 16.35 | 30.73 |
CDY16798 | Canola | nucleus | 25.05 | 30.22 |
CDY54111 | Canola | nucleus | 15.78 | 29.45 |
CDY55738 | Canola | nucleus | 14.74 | 28.89 |
CDX94484 | Canola | nucleus | 14.74 | 24.92 |
CDX94528 | Canola | nucleus | 14.56 | 23.02 |
CDY24162 | Canola | nucleus | 12.29 | 20.0 |
Protein Annotations
MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078HR47 | UniProt:A0A078HR47 |
InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY41030 | ProteinID:CDY41030 | ProteinID:CDY41030.1 |
ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00072327001 |
InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 |
PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF21 | SMART:SM01019 |
SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0004EED36D | SEG:seg | : | : |
Description
BnaC05g14880DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078HR47]
Coordinates
chrLK032488:-:121560..126304
Molecular Weight (calculated)
117208.0 Da
IEP (calculated)
6.774
GRAVY (calculated)
-0.636
Length
1058 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKAPSNGFHP NPTEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKINR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSA GAAAATTHLP SSYNLPNNFA PNDHSKLLNF QSPNLSPANT QFNKPNMVSH ISQQMQAQPA MVQSQQQQQQ
0501: QQQQQLQQQV QMSHQQLQQQ HHQHQQQGGY NSGSVNNGVS VVSNQVSCQN QSAGFTQSQL QQQSMLSNGA KMTHQNMVSA GNKGSSQMTA QELQFQQQLE
0601: LHNSTQLLRN QQEQSSMHSL QQNPQQLQMQ QQQSSKPSPS QQLQLQLLQK LQQQQQLTPP PVSSSSQPQL SSLQQTQSHQ LQQLLSSQNQ QPLPQSNNNS
0701: FMQPPQIQAS HHQQQGYMNN NKPIVRSQSG HIDGEAPSCS TSPSANNTGH GNVSPTNFLS RNQQQGQGVS VPASDPVQQG MVNLKSAGEQ FKFKAAVTDQ
0801: IGVTTAGTTY CPDVVVGPGQ QQQQTFPLPS FGFDGDLQQS QHPRNSLAFA GNIEAVNPDA LYSQKDFQNL VVPNYGNAPR DIETELSSAS QSFGIPSIPF
0901: KSGGSNEIGG INDSGIMNGG IWPNQAQRMR TYTKVQKRGS VGRSIDVTRY SGYEELRNDL ARMFGIEGQL EDPQISDWKL VYTDHENDIL LVGDDPWEEF
1001: VNCVQNVKIL SSAEVQQMSL DGDLAAIPTT NQACSETDSG NAWKVHYEDT SAAASFNR
0101: VNKYDREALL ASDMGLKINR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSA GAAAATTHLP SSYNLPNNFA PNDHSKLLNF QSPNLSPANT QFNKPNMVSH ISQQMQAQPA MVQSQQQQQQ
0501: QQQQQLQQQV QMSHQQLQQQ HHQHQQQGGY NSGSVNNGVS VVSNQVSCQN QSAGFTQSQL QQQSMLSNGA KMTHQNMVSA GNKGSSQMTA QELQFQQQLE
0601: LHNSTQLLRN QQEQSSMHSL QQNPQQLQMQ QQQSSKPSPS QQLQLQLLQK LQQQQQLTPP PVSSSSQPQL SSLQQTQSHQ LQQLLSSQNQ QPLPQSNNNS
0701: FMQPPQIQAS HHQQQGYMNN NKPIVRSQSG HIDGEAPSCS TSPSANNTGH GNVSPTNFLS RNQQQGQGVS VPASDPVQQG MVNLKSAGEQ FKFKAAVTDQ
0801: IGVTTAGTTY CPDVVVGPGQ QQQQTFPLPS FGFDGDLQQS QHPRNSLAFA GNIEAVNPDA LYSQKDFQNL VVPNYGNAPR DIETELSSAS QSFGIPSIPF
0901: KSGGSNEIGG INDSGIMNGG IWPNQAQRMR TYTKVQKRGS VGRSIDVTRY SGYEELRNDL ARMFGIEGQL EDPQISDWKL VYTDHENDIL LVGDDPWEEF
1001: VNCVQNVKIL SSAEVQQMSL DGDLAAIPTT NQACSETDSG NAWKVHYEDT SAAASFNR
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.