Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87230 | Canola | nucleus | 85.19 | 87.56 |
| CDX86939 | Canola | nucleus | 84.72 | 84.82 |
| AT5G62000.1 | Thale cress | nucleus | 85.08 | 84.28 |
| CDY00245 | Canola | nucleus | 84.25 | 84.25 |
| CDY16798 | Canola | nucleus | 83.43 | 80.96 |
| Os11t0523800-01 | Rice | nucleus | 31.61 | 73.5 |
| VIT_17s0000g00320.t01 | Wine grape | nucleus | 66.75 | 65.89 |
| KRH41062 | Soybean | nucleus | 64.16 | 64.16 |
| KRH63855 | Soybean | nucleus | 63.45 | 64.06 |
| KRH54110 | Soybean | nucleus | 63.22 | 63.82 |
| KRH59742 | Soybean | nucleus | 64.04 | 63.52 |
| PGSC0003DMT400037454 | Potato | nucleus | 60.99 | 62.61 |
| Solyc12g042070.1.1 | Tomato | nucleus | 60.63 | 62.32 |
| PGSC0003DMT400036765 | Potato | nucleus | 60.4 | 60.83 |
| Solyc03g118290.2.1 | Tomato | nucleus | 60.28 | 60.64 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 56.17 | 58.01 |
| GSMUA_Achr10P... | Banana | nucleus | 54.64 | 56.43 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 56.17 | 54.75 |
| TraesCS3D01G434700.1 | Wheat | nucleus | 50.76 | 54.27 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 50.76 | 54.2 |
| TraesCS3B01G475800.1 | Wheat | nucleus | 50.41 | 53.89 |
| Os01t0927600-01 | Rice | nucleus | 50.88 | 53.59 |
| CDY27291 | Canola | nucleus | 38.9 | 53.47 |
| Zm00001d011953_P002 | Maize | nucleus | 50.53 | 53.35 |
| KXG34038 | Sorghum | nucleus | 50.76 | 53.33 |
| OQU83539 | Sorghum | nucleus | 51.0 | 53.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.76 | 52.71 |
| Zm00001d042267_P003 | Maize | nucleus | 50.65 | 52.69 |
| CDX80025 | Canola | nucleus | 35.84 | 52.23 |
| CDY47607 | Canola | nucleus | 36.78 | 51.82 |
| CDX95705 | Canola | nucleus | 33.02 | 51.56 |
| Os12t0479400-02 | Rice | nucleus | 50.41 | 51.01 |
| CDY33603 | Canola | nucleus | 39.25 | 50.53 |
| CDY65065 | Canola | nucleus | 39.25 | 50.53 |
| TraesCS3B01G486000.2 | Wheat | nucleus | 49.0 | 50.48 |
| CDY10978 | Canola | nucleus | 36.9 | 50.24 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 48.88 | 50.18 |
| CDY50434 | Canola | nucleus | 36.43 | 49.6 |
| EES17013 | Sorghum | nucleus | 48.53 | 49.23 |
| HORVU3Hr1G097200.10 | Barley | nucleus | 48.77 | 49.11 |
| Zm00001d049295_P001 | Maize | nucleus | 50.29 | 48.86 |
| HORVU3Hr1G096410.4 | Barley | nucleus, plastid | 46.06 | 48.76 |
| Zm00001d023659_P007 | Maize | nucleus | 47.24 | 48.67 |
| CDY03502 | Canola | nucleus | 34.31 | 48.67 |
| Zm00001d041056_P019 | Maize | nucleus | 46.89 | 47.27 |
| TraesCS3D01G442000.7 | Wheat | nucleus | 49.0 | 47.07 |
| HORVU3Hr1G096510.3 | Barley | plastid | 46.06 | 47.0 |
| CDY67714 | Canola | nucleus | 25.15 | 40.3 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 17.39 | 40.0 |
| CDY69758 | Canola | nucleus | 19.51 | 39.9 |
| CDY53570 | Canola | nucleus | 23.15 | 39.32 |
| CDY21993 | Canola | nucleus | 25.15 | 39.27 |
| CDY48583 | Canola | nucleus | 25.15 | 39.12 |
| CDY41720 | Canola | nucleus | 24.79 | 38.36 |
| CDY49005 | Canola | nucleus | 24.56 | 37.52 |
| CDX94777 | Canola | nucleus | 24.56 | 37.52 |
| CDY36940 | Canola | nucleus | 23.97 | 36.82 |
| CDY55738 | Canola | nucleus | 23.15 | 36.48 |
| CDY54111 | Canola | nucleus | 23.97 | 35.98 |
| CDY31545 | Canola | nucleus | 31.96 | 35.93 |
| CDY24168 | Canola | nucleus | 23.74 | 35.88 |
| CDX80168 | Canola | nucleus | 31.49 | 35.31 |
| CDY12048 | Canola | nucleus | 32.67 | 32.82 |
| CDY39274 | Canola | nucleus | 29.85 | 32.61 |
| CDX90245 | Canola | nucleus | 32.43 | 32.39 |
| CDY07460 | Canola | nucleus | 29.73 | 32.39 |
| CDY02285 | Canola | nucleus | 32.31 | 31.5 |
| CDY53537 | Canola | nucleus | 30.08 | 31.45 |
| CDY09598 | Canola | nucleus | 32.08 | 31.38 |
| CDX74594 | Canola | nucleus | 30.08 | 31.26 |
| CDX94484 | Canola | nucleus | 22.21 | 30.19 |
| CDX83741 | Canola | nucleus | 28.32 | 28.49 |
| CDY62586 | Canola | nucleus | 28.32 | 28.49 |
| CDY01393 | Canola | nucleus | 28.55 | 28.09 |
| CDY61164 | Canola | nucleus | 28.32 | 27.99 |
| CDY29392 | Canola | nucleus | 28.55 | 27.74 |
| CDY39348 | Canola | nucleus | 28.44 | 27.53 |
| CDX94528 | Canola | nucleus | 21.15 | 26.91 |
| CDX83778 | Canola | nucleus | 30.9 | 25.78 |
| CDX96672 | Canola | nucleus | 30.79 | 25.69 |
| CDY26690 | Canola | nucleus | 31.49 | 25.55 |
| CDY41030 | Canola | nucleus | 31.14 | 25.05 |
| CDX92437 | Canola | nucleus | 30.2 | 24.71 |
| CDY16560 | Canola | nucleus | 29.73 | 24.28 |
| CDY24162 | Canola | nucleus | 18.21 | 23.85 |
| CDY45069 | Canola | nucleus | 30.32 | 23.18 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078JPD8 | UniProt:A0A078JPD8 |
| InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY67247 | ProteinID:CDY67247 | ProteinID:CDY67247.1 |
| ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00060504001 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 |
| PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF8 | SMART:SM01019 |
| SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0004EE08DC | SEG:seg | : | : |
Description
BnaCnng54100DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078JPD8]
Coordinates
chrLK035903:+:3068..7558
Molecular Weight (calculated)
95527.9 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.690
Length
851 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSVKGNHG GGGENAVSVV SGEGQKSNLN RVVDEEAAIY RELWHACAGP LVTVPRRDDR VFYFPQGHIE QVEASTNQAA EQQMPLYDLP SKLLCRVINV
101: DLKAEVDTDE VYAQITLLPE PNQDENAVEK EAPPPPPPRF QVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP PTQELVAKDL HANEWRFRHI
201: FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMRQQ GIVPSSVISS HSMHLGVLAT AWHAISTGTM FTVYYKPRTS PSEFIVPFDQ
301: YMESVKNNYS IGMRFKMRFE GEEAPEQRFT GTIVGIEDSD PTRWAKSKWR SLKVRWDETS SIPRPERVSP WKIEPALAPP ALSPVPMTRP KRPRYNMASS
401: SPDSSMHIKE GSSKVNVYPL PASGLSRVLQ GQEYPTLRTK HTESVECDAP ESSVVWQSSA DDDKVDVASR RYENWMSSGR HEYTDLLSGF GANVDPSQGH
501: QIPFHDHSSS PSVTAKKILS DQDAKFDYLA NQWQMMNSGL SLKLHESPQI PSASDASFQG RGNATYGEYP VLHSLTTETA GGNWPIRPRA LNYFEEAVHA
601: QAREHVTERP QMVQEETAKS RDGNCRLFGI PLVNNVNETD STMSQRNNLN ENSGFTQMAS PKVQDLSDHS KGSKSTNDHR EQGRPSQAKQ PHAKDSHCKT
701: NSNRSCTKVH KQGIALGRSV DLSKFQNYEE LIAELDMLFE FNGELMAPKK DWLIVYTDDE NDMMLVGDDP WQEFCCMVRK IFIYTKEEVR NMNPRTLSCR
801: SEEEAVVGEG SDAKDGKSAS NPSLSSELLN QKNQHTLQAE GDVEAQIRRR V
101: DLKAEVDTDE VYAQITLLPE PNQDENAVEK EAPPPPPPRF QVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP PTQELVAKDL HANEWRFRHI
201: FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMRQQ GIVPSSVISS HSMHLGVLAT AWHAISTGTM FTVYYKPRTS PSEFIVPFDQ
301: YMESVKNNYS IGMRFKMRFE GEEAPEQRFT GTIVGIEDSD PTRWAKSKWR SLKVRWDETS SIPRPERVSP WKIEPALAPP ALSPVPMTRP KRPRYNMASS
401: SPDSSMHIKE GSSKVNVYPL PASGLSRVLQ GQEYPTLRTK HTESVECDAP ESSVVWQSSA DDDKVDVASR RYENWMSSGR HEYTDLLSGF GANVDPSQGH
501: QIPFHDHSSS PSVTAKKILS DQDAKFDYLA NQWQMMNSGL SLKLHESPQI PSASDASFQG RGNATYGEYP VLHSLTTETA GGNWPIRPRA LNYFEEAVHA
601: QAREHVTERP QMVQEETAKS RDGNCRLFGI PLVNNVNETD STMSQRNNLN ENSGFTQMAS PKVQDLSDHS KGSKSTNDHR EQGRPSQAKQ PHAKDSHCKT
701: NSNRSCTKVH KQGIALGRSV DLSKFQNYEE LIAELDMLFE FNGELMAPKK DWLIVYTDDE NDMMLVGDDP WQEFCCMVRK IFIYTKEEVR NMNPRTLSCR
801: SEEEAVVGEG SDAKDGKSAS NPSLSSELLN QKNQHTLQAE GDVEAQIRRR V
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.