Factsheet for PGSC0003DMT400037454

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400068764
PGSC0003DMT400073091

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	PGSC0003DMT400068764	AT4G18710.1	18599455
AT5G62000.1	PGSC0003DMT400073091	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042070.1.1	Tomato	nucleus	96.14	96.26
PGSC0003DMT400036765	Potato	nucleus	79.13	77.63
Os11t0523800-01	Rice	nucleus	32.33	73.22
VIT_17s0000g00320.t01	Wine grape	nucleus	72.5	69.72
KRH41062	Soybean	nucleus	66.95	65.22
KRH54110	Soybean	nucleus	65.86	64.77
KRH59742	Soybean	nucleus	66.95	64.69
KRH63855	Soybean	nucleus	65.74	64.65
CDX87230	Canola	nucleus	63.09	63.16
AT5G62000.1	Thale cress	nucleus	65.38	63.1
CDX86939	Canola	nucleus	63.69	62.12
Bra010048.1-P	Field mustard	nucleus	63.69	62.04
CDY00245	Canola	nucleus	63.69	62.04
CDY67247	Canola	nucleus	62.61	60.99
CDY16798	Canola	nucleus	62.73	59.29
Bra035910.1-P	Field mustard	nucleus	63.21	59.01
GSMUA_Achr6P08090_001	Banana	nucleus	58.62	58.98
GSMUA_Achr10P...	Banana	nucleus	57.3	57.65
TraesCS3D01G434700.1	Wheat	nucleus	52.96	55.15
GSMUA_Achr6P16450_001	Banana	nucleus	58.02	55.1
TraesCS3B01G475800.1	Wheat	nucleus	52.71	54.9
TraesCS3A01G442000.1	Wheat	nucleus	52.59	54.71
OQU83539	Sorghum	nucleus	53.68	54.6
Os01t0927600-01	Rice	nucleus	52.83	54.21
GSMUA_AchrUn_...	Banana	nucleus	56.82	53.28
Os12t0479400-02	Rice	nucleus	53.8	53.03
KXG34038	Sorghum	nucleus	51.03	52.22
Zm00001d011953_P002	Maize	nucleus	50.66	52.11
PGSC0003DMT400053380	Potato	nucleus	40.77	51.68
Zm00001d042267_P003	Maize	nucleus	50.66	51.34
TraesCS3B01G486000.2	Wheat	nucleus	50.9	51.09
TraesCS3A01G449300.3	Wheat	nucleus	51.03	51.03
EES17013	Sorghum	nucleus	51.15	50.54
HORVU3Hr1G097200.10	Barley	nucleus	51.15	50.18
Zm00001d041056_P019	Maize	nucleus	51.03	50.12
Zm00001d049295_P001	Maize	nucleus	52.96	50.11
Zm00001d023659_P007	Maize	nucleus	49.34	49.52
HORVU3Hr1G096410.4	Barley	nucleus, plastid	48.01	49.5
PGSC0003DMT400000345	Potato	nucleus	39.93	48.32
TraesCS3D01G442000.7	Wheat	nucleus	51.63	48.31
HORVU3Hr1G096510.3	Barley	plastid	48.13	47.84
PGSC0003DMT400031965	Potato	nucleus	36.07	45.65
PGSC0003DMT400020839	Potato	nucleus	31.97	32.68
PGSC0003DMT400041127	Potato	nucleus	32.69	30.38
PGSC0003DMT400074169	Potato	nucleus	31.6	29.64
PGSC0003DMT400048034	Potato	nucleus	25.21	27.79
PGSC0003DMT400009660	Potato	nucleus	31.0	27.66
PGSC0003DMT400025312	Potato	nucleus	34.26	25.49
PGSC0003DMT400035592	Potato	nucleus	32.57	24.61
PGSC0003DMT400048032	Potato	nucleus	4.7	23.93
PGSC0003DMT400006151	Potato	nucleus	31.36	22.47

Protein Annotations

EntrezGene:102594206	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1B5E8	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	EnsemblPlantsGene:PGSC0003DMG400014452	PGSC:PGSC0003DMG400014452	EnsemblPlants:PGSC0003DMT400037454	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI000296083E	RefSeq:XP_006346635.1	SEG:seg	:	:	:

Description

Auxin response factor 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400014452]

Coordinates

chr12:-:48740087..48746689

Molecular Weight (calculated)

92639.3 Da

IEP (calculated)

6.847

GRAVY (calculated)

-0.612

Length

829 amino acids

Sequence
(BLAST)

001: MATSESCRNA TGAGKVDAEK ALYTELWRAC AGPLVTVPCE DELVFYFPQG HIEQVEASTN QASDQQMPVY NLRSKILCRV INVLLKAEPD TDEVYAQVTL
101: LPEPNQDENV VSKEPMPSPP PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHANEWRF RHIFRGQPRR HLLQSGWSVF
201: VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNAPSSV ISSHSMHLGV LATAWHAIQT KTLFTVYYKP RTSPAEFIVP YDQYMESLKN NYSIGMRFKM
301: RFEGEEAPEQ RFTGTIVGIE NADLKRWPES KWRCLKVRWD ETSAIPRPDR VSPWKVEPAL SPPALDPLPI PRQKRPRSNV LPSSPDSSVL TREGSSKVTV
401: DPSQASGFSR VLQGQEISTL RGNFVENNES DSSEKPPVWQ PLLDDEKADV HSASRKCISD KRFPLARPES SLTDLLSGFG GQSSSSHGFH SPTRGQTAPA
501: SWVKRQALDK ETDFSLLGKQ WSLVSSGLSL NLMDSGLKGA DTLYQMRGTS RLNGFNEYPT LPGHRTDNQQ GSWLMSPSVL PYIQMSTRSG EIMPKPMASP
601: QPEAMKPKEG NCKLFGIPLV SKCATIDPVM LRKNSPIDST SNMHFGIHPH QFPITESDQR SEQSKGSKLP DDGITVHDQE EQFQTSHPGT RDREGKVLVN
701: STRSCTKVHK QGTALGRSVD LAKFNNYEEL IAELDHIFDF NGELKARNKN WLVVYTDDEG DMMLVGDDPW QEFCGMVRKI FIYTKDEVQR MNPGTLNSKG
801: EDISSVAEGS DGKEVKNLQL HSDSSPEDS

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.