Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g006350.1.1 | Tomato | nucleus | 20.7 | 98.39 |
| PGSC0003DMT400041127 | Potato | nucleus | 79.75 | 79.04 |
| KRH73577 | Soybean | nucleus | 68.1 | 67.19 |
| VIT_12s0028g01170.t01 | Wine grape | nucleus | 70.25 | 66.99 |
| KRH14545 | Soybean | nucleus | 67.19 | 66.29 |
| PGSC0003DMT400048032 | Potato | nucleus | 10.86 | 58.9 |
| PGSC0003DMT400048034 | Potato | nucleus | 46.27 | 54.39 |
| GSMUA_Achr1P08230_001 | Banana | mitochondrion | 35.29 | 46.99 |
| PGSC0003DMT400009660 | Potato | nucleus | 40.16 | 38.21 |
| PGSC0003DMT400053380 | Potato | nucleus | 27.04 | 36.54 |
| PGSC0003DMT400000345 | Potato | nucleus | 26.7 | 34.45 |
| PGSC0003DMT400025312 | Potato | nucleus | 42.42 | 33.66 |
| PGSC0003DMT400006151 | Potato | nucleus | 43.78 | 33.45 |
| PGSC0003DMT400035592 | Potato | nucleus | 41.4 | 33.36 |
| PGSC0003DMT400031965 | Potato | nucleus | 24.43 | 32.98 |
| PGSC0003DMT400037454 | Potato | nucleus | 29.64 | 31.6 |
| PGSC0003DMT400036765 | Potato | nucleus | 29.41 | 30.77 |
| PGSC0003DMT400020839 | Potato | nucleus | 27.38 | 29.84 |
Protein Annotations
| EntrezGene:102598519 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M1CTA3 | InterPro:PB1_dom | PFAM:PF02309 |
| PFAM:PF02362 | PFAM:PF06507 | EnsemblPlantsGene:PGSC0003DMG400028826 | PGSC:PGSC0003DMG400028826 | EnsemblPlants:PGSC0003DMT400074169 | PFscan:PS50863 |
| PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF68 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 |
| UniParc:UPI000294FEB6 | RefSeq:XP_006351989.1 | SEG:seg | : | : | : |
Description
Auxin response factor 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400028826]
Coordinates
chr12:-:5941093..5948789
Molecular Weight (calculated)
97976.7 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.408
Length
884 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVSTSGFNS QPEEAGEKKC LNSELWHACA GPLVSLPHVG TRVVYFPQGH SEQVAASTNK EINGHIPNYP GLPPQLICQL HNVTMDADVE TDEVYAQMTL
101: QPLTPQEQKD VCLLPAELGT LSKQPNNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPVQELI GKDLHGNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVIFIWNEN NQLLLGIRRA NRPQTVLPSS VLSSDSMHIG LLAAAAHATA TNSRFTIFFN PRACPSEFVI PLAKYAKAVY HTRVSVGMRF
301: RMLFETEESS IRRYMGTITG IGDLDPARWP NSHWQSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FSLRLKRPWP PGLPSFPGLS NGDMTMSSQL
401: PWLHGGMGDQ GIQSLNFQGF GVTPFVHPRF DASMLGLQPD ILQAMATLDS SKLANQPLMQ FQHIPSGSAS SIQNQLLHPS NLQHTFLQGL PENQLISQAQ
501: MLQQQLQCHQ SYNAQQQQLQ RQQLYHDQQL QEPHQVHLQR QDQQQTKAQL CSATQSQLSH LQVLGSTGSQ QTFSDLVGNH INTSNNRSTM QSLLSSFSRN
601: GASTFLNMPE TNSLVSPSSS SKRIALESQI PSQAPYIVTQ AEVLTVPNTK VSDFSTLFSP NPGRQVLDYQ AVAVSQNNAL FGVNGMSNLK GNSPENRSLP
701: MPYATSAFTS TVGSEYPVTS DMTTSSCVDE SGVLQSSENV DQANSLTETF VKVYKSESFG RSLDISKFSS YNELRSELAR MFGLEGLLED PERSGWQLVF
801: VDRENDVLLL GDDPWHEFVN SVWYIKILSP LEVQQMGKEG LDLPSAGKTQ RITSNGNGNG CDDFMNRNHS CNIMNGIPLG SLDY
101: QPLTPQEQKD VCLLPAELGT LSKQPNNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPVQELI GKDLHGNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVIFIWNEN NQLLLGIRRA NRPQTVLPSS VLSSDSMHIG LLAAAAHATA TNSRFTIFFN PRACPSEFVI PLAKYAKAVY HTRVSVGMRF
301: RMLFETEESS IRRYMGTITG IGDLDPARWP NSHWQSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FSLRLKRPWP PGLPSFPGLS NGDMTMSSQL
401: PWLHGGMGDQ GIQSLNFQGF GVTPFVHPRF DASMLGLQPD ILQAMATLDS SKLANQPLMQ FQHIPSGSAS SIQNQLLHPS NLQHTFLQGL PENQLISQAQ
501: MLQQQLQCHQ SYNAQQQQLQ RQQLYHDQQL QEPHQVHLQR QDQQQTKAQL CSATQSQLSH LQVLGSTGSQ QTFSDLVGNH INTSNNRSTM QSLLSSFSRN
601: GASTFLNMPE TNSLVSPSSS SKRIALESQI PSQAPYIVTQ AEVLTVPNTK VSDFSTLFSP NPGRQVLDYQ AVAVSQNNAL FGVNGMSNLK GNSPENRSLP
701: MPYATSAFTS TVGSEYPVTS DMTTSSCVDE SGVLQSSENV DQANSLTETF VKVYKSESFG RSLDISKFSS YNELRSELAR MFGLEGLLED PERSGWQLVF
801: VDRENDVLLL GDDPWHEFVN SVWYIKILSP LEVQQMGKEG LDLPSAGKTQ RITSNGNGNG CDDFMNRNHS CNIMNGIPLG SLDY
001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L
Arabidopsis Description
ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.