Factsheet for PGSC0003DMT400031965

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000345
PGSC0003DMT400001013
PGSC0003DMT400006151
PGSC0003DMT400006709
PGSC0003DMT400006800
PGSC0003DMT400009660
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400020839
PGSC0003DMT400020874
PGSC0003DMT400031965
PGSC0003DMT400034978
PGSC0003DMT400035770
PGSC0003DMT400036765
PGSC0003DMT400037454
PGSC0003DMT400042074
PGSC0003DMT400042572
PGSC0003DMT400052767
PGSC0003DMT400053380
PGSC0003DMT400062489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34310.1	PGSC0003DMT400009660	AT1G19850.1	22096563
AT1G34310.1	PGSC0003DMT400031965	AT1G34310.1	22096563
AT1G34310.1	PGSC0003DMT400053380	AT1G59750.1	22096563
AT1G34310.1	PGSC0003DMT400031965	AT4G23980.1	22096563
AT1G34310.1	PGSC0003DMT400036765	AT5G62000.1	21734647
AT1G34310.1	PGSC0003DMT400037454	AT5G62000.1	21734647
AT1G34390.1	PGSC0003DMT400031965	AT1G34310.1	21734647
AT1G34390.1	PGSC0003DMT400015610	AT3G23050.1	21734647
AT1G35240.1	PGSC0003DMT400015610	AT1G04250.1	21734647
AT1G35240.1	PGSC0003DMT400006151	AT5G20730.1	21734647
AT4G23980.1	PGSC0003DMT400009660	AT1G19850.1	22096563
AT4G23980.1	PGSC0003DMT400031965	AT1G35240.1	21734647
AT4G23980.1	PGSC0003DMT400053380	AT1G59750.1	22096563
AT4G23980.1	PGSC0003DMT400020874	AT2G28350.1	22096563
AT4G23980.1	PGSC0003DMT400062489	AT2G28350.1	22096563
AT4G23980.1	PGSC0003DMT400006800	AT3G15540.1	22096563
AT4G23980.1	PGSC0003DMT400042572	AT3G15540.1	22096563
AT4G23980.1	PGSC0003DMT400006709	AT3G16500.1	21734647
AT4G23980.1	PGSC0003DMT400000345	AT3G61830.1	22096563
AT4G23980.1	PGSC0003DMT400031965	AT4G23980.1	22096563
AT4G23980.1	PGSC0003DMT400001013	AT4G29080.1	21734647
AT4G23980.1	PGSC0003DMT400035770	AT4G32280.1	21734647
AT4G23980.1	PGSC0003DMT400052767	AT4G32280.1	21734647
AT4G23980.1	PGSC0003DMT400015655	AT5G43700.1	21734647
AT4G23980.1	PGSC0003DMT400034978	AT5G43700.1	21734647
AT4G23980.1	PGSC0003DMT400042074	AT5G43700.1	21734647
AT4G23980.1	PGSC0003DMT400020839	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082630.2.1	Tomato	nucleus	87.33	88.82
VIT_02s0025g01740.t01	Wine grape	nucleus	61.07	58.65
Bra013748.1-P	Field mustard	nucleus	51.6	56.15
CDY47607	Canola	nucleus	51.6	55.96
CDY10978	Canola	nucleus	52.67	55.2
KRH00001	Soybean	nucleus	55.73	54.97
Bra019255.1-P	Field mustard	nucleus	52.21	54.9
KRH65922	Soybean	nucleus	57.86	54.85
KRH75716	Soybean	nucleus	57.71	54.62
CDY50434	Canola	nucleus	52.06	54.56
KRH49135	Soybean	nucleus	55.27	54.52
AT4G23980.1	Thale cress	nucleus	52.98	54.39
CDY03502	Canola	nucleus	49.16	53.67
PGSC0003DMT400000345	Potato	nucleus	54.05	51.68
GSMUA_Achr2P19760_001	Banana	nucleus	51.15	50.15
PGSC0003DMT400053380	Potato	nucleus	49.77	49.85
GSMUA_Achr10P...	Banana	nucleus	50.69	49.78
GSMUA_Achr7P24330_001	Banana	nucleus	50.38	49.55
GSMUA_AchrUn_...	Banana	nucleus	47.48	48.98
CDY67714	Canola	nucleus	34.81	42.94
CDY69758	Canola	nucleus	27.02	42.55
CDY21993	Canola	nucleus	35.27	42.39
Bra034234.1-P	Field mustard	nucleus	34.96	42.33
Os01t0236300-01	Rice	nucleus	44.73	41.92
CDY48583	Canola	nucleus	34.96	41.86
AT1G35240.1	Thale cress	nucleus	37.56	41.55
AT1G34390.1	Thale cress	nucleus	37.71	41.3
EES02172	Sorghum	nucleus	43.36	41.28
AT1G34410.1	Thale cress	nucleus	38.02	41.09
AT1G34310.1	Thale cress	nucleus	36.95	40.81
CDX94748	Canola	endoplasmic reticulum, vacuole	22.9	40.54
CDY53570	Canola	nucleus	30.99	40.52
AT1G35540.1	Thale cress	nucleus	37.4	40.5
AT1G35520.1	Thale cress	nucleus	36.64	40.47
Bra027944.1-P	Field mustard	nucleus	33.28	39.71
CDY41720	Canola	nucleus	33.28	39.64
AT1G34170.3	Thale cress	nucleus	32.21	38.64
Zm00001d039267_P005	Maize	nucleus	40.46	38.29
TraesCS3A01G159200.1	Wheat	nucleus	44.27	38.21
TraesCS3D01G166700.1	Wheat	nucleus	44.12	38.13
TraesCS3B01G190100.1	Wheat	nucleus	44.12	38.13
CDX94777	Canola	nucleus	32.37	38.06
CDY49005	Canola	nucleus	32.21	37.88
CDY36940	Canola	nucleus	31.76	37.55
Bra018124.1-P	Field mustard	nucleus	31.3	36.94
CDY55738	Canola	nucleus	30.23	36.67
CDY24168	Canola	nucleus	31.45	36.59
CDY54111	Canola	nucleus	31.6	36.51
Bra017362.1-P	Field mustard	nucleus	29.92	36.3
PGSC0003DMT400036765	Potato	nucleus	46.56	36.09
PGSC0003DMT400037454	Potato	nucleus	45.65	36.07
HORVU3Hr1G032230.6	Barley	nucleus, plastid	43.82	35.88
CDX94484	Canola	nucleus	29.62	30.99
PGSC0003DMT400020839	Potato	nucleus	35.27	28.48
CDX94528	Canola	nucleus	26.72	26.16
PGSC0003DMT400048034	Potato	nucleus	29.31	25.53
PGSC0003DMT400041127	Potato	nucleus	34.35	25.22
CDY24162	Canola	nucleus	24.27	24.46
PGSC0003DMT400074169	Potato	nucleus	32.98	24.43
PGSC0003DMT400009660	Potato	nucleus	33.44	23.57
PGSC0003DMT400048032	Potato	nucleus	5.34	21.47
PGSC0003DMT400025312	Potato	nucleus	35.73	21.01
PGSC0003DMT400035592	Potato	nucleus	34.5	20.6
PGSC0003DMT400006151	Potato	nucleus	35.11	19.88

Protein Annotations

EntrezGene:102605272	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1AWK9	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	EnsemblPlantsGene:PGSC0003DMG400012261	PGSC:PGSC0003DMG400012261	EnsemblPlants:PGSC0003DMT400031965	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF1	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI00029650D3	RefSeq:XP_006343828.1	SEG:seg	:	:	:

Description

Auxin response factor 9 [Source:PGSC_GENE;Acc:PGSC0003DMG400012261]

Coordinates

chr8:+:56233732..56238402

Molecular Weight (calculated)

73490.2 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.495

Length

655 amino acids

Sequence
(BLAST)

001: MASKNGCYQS QQKKNSSGKD DLYHELWQLC AGPIVDVPKE GESVYYFPQG HMEQLVASIN QEMDQRVPSF NLKSKILCRV INSHFLAEED NDEVYVQITL
101: MPEAPDKAEP TNPDPFLPEP VKPKVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMN QQIPTQELIA KDLHDMEWHF KHIFRGQPRR HLLTTGWSNF
201: VSSKRLVAGD SFVFLRGDNG ELRVGVRRLV RQQSSMPSSV ISSQSMHLGV LATASHAVTT QTLFVVYYKP RTTQFIVSLN KYLEAVNHGY SVGMRFKMQF
301: EAEENPDRRF MGTIVGVDDL SSQWKDSAWR SLKVRWDEPA AIARPDRVSP WEIEPYVSSI PNALVPPTAG KNKRHRLHSE IKISEPASSI ASAVWNPSLD
401: SPQFNTSGIN SSTNCTLTSR TESGWPLPHL NTAGMLVDET EDSRSASTWC GFPCVLAPQF GQGTNQPIVI PTDERKCNTK TTCRLFGIDL KKTSISTTEA
501: LLPPQPADIS RVSAERAPPN MAPAGDSDQK SDLSVDFKDQ MQGHLRLPLK EVQSKQSCST RSRTKVQMQG VAVGRAVDLT ILKGYNELTK ELEEMFEIQG
601: ELQSRQKWGI LFTDDEGDTM LMDDYPWQDF CNVARKIFIC SSQDMKKLTL SRADS

Best Arabidopsis Sequence Match ( AT4G23980.1 )
(BLAST)

001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN

Arabidopsis Description

ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.