Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006151 | |
| PGSC0003DMT400093571 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | PGSC0003DMT400006151 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | PGSC0003DMT400006151 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | PGSC0003DMT400093571 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g021820.2.1 | Tomato | nucleus | 91.32 | 88.11 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 24.2 | 58.24 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 19.18 | 41.18 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 14.61 | 39.02 |
| PGSC0003DMT400079375 | Potato | cytosol | 35.62 | 38.61 |
| KRH52428 | Soybean | nucleus | 39.27 | 37.89 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 39.27 | 37.89 |
| KRH61758 | Soybean | nucleus | 38.81 | 37.61 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 27.4 | 37.5 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 20.09 | 36.97 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 26.03 | 36.08 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 24.2 | 35.33 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 27.4 | 34.88 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 22.83 | 34.48 |
| CDX68829 | Canola | nucleus | 35.16 | 33.77 |
| Bra011332.1-P | Field mustard | nucleus | 35.16 | 33.33 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 25.57 | 33.33 |
| CDX75231 | Canola | nucleus | 35.16 | 33.33 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 26.03 | 32.76 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 26.03 | 32.2 |
| AT4G32280.1 | Thale cress | cytosol | 36.53 | 31.87 |
| Os06t0166500-01 | Rice | nucleus | 26.48 | 31.69 |
| KXG31308 | Sorghum | cytosol | 28.31 | 31.47 |
| Os02t0805100-01 | Rice | nucleus | 26.03 | 31.32 |
| CDX72351 | Canola | nucleus | 35.16 | 31.17 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 25.11 | 31.07 |
| KXG19391 | Sorghum | nucleus | 28.77 | 30.88 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 24.66 | 30.86 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 24.2 | 30.81 |
| CDY13478 | Canola | nucleus | 33.33 | 30.04 |
| Bra023958.1-P | Field mustard | nucleus | 33.33 | 30.04 |
| Zm00001d000288_P001 | Maize | cytosol | 26.48 | 29.44 |
| Zm00001d045203_P001 | Maize | cytosol | 28.31 | 28.7 |
| Zm00001d018414_P001 | Maize | nucleus | 26.94 | 28.64 |
| PGSC0003DMT400075427 | Potato | nucleus | 24.66 | 23.28 |
| PGSC0003DMT400003784 | Potato | nucleus | 24.66 | 19.93 |
| PGSC0003DMT400006709 | Potato | nucleus | 23.29 | 18.02 |
| PGSC0003DMT400022133 | Potato | nucleus | 23.74 | 16.51 |
Protein Annotations
| EntrezGene:102602017 | Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| UniProt:M1B2T6 | InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400013765 | PGSC:PGSC0003DMG400013765 | EnsemblPlants:PGSC0003DMT400035770 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 | SUPFAM:SSF54277 | UniParc:UPI0002956A92 | RefSeq:XP_006343525.1 |
| SEG:seg | : | : | : | : | : |
Description
ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013765]
Coordinates
chr8:-:17229794..17234120
Molecular Weight (calculated)
25821.6 Da
IEP (calculated)
9.362
GRAVY (calculated)
-0.916
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLAIS NCNHFPTNGI KDSFDDSFSE MKMKMKQKRC FEESFEDKGV VERKTLSLFI WNGQPNEDDD HHGRNKKPFN ATCHKDFEKE NLKLLGWPPI
101: NTWRKKQFHN QGHAGWITND RNNSNNNIIV GRRNSMYVKV KMEGVPIGRK VDIRLYHSYQ LLTQNLLQMF SKYQNSGNNS TRFTILYQDR EGDWMLAGDV
201: PWKTFVETVQ RIEIQKNEK
101: NTWRKKQFHN QGHAGWITND RNNSNNNIIV GRRNSMYVKV KMEGVPIGRK VDIRLYHSYQ LLTQNLLQMF SKYQNSGNNS TRFTILYQDR EGDWMLAGDV
201: PWKTFVETVQ RIEIQKNEK
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.