Factsheet for PGSC0003DMT400003784

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090910.1.1	Tomato	nucleus	97.42	93.62
PGSC0003DMT400075427	Potato	nucleus	56.46	65.95
AT2G33310.2	Thale cress	nucleus	53.14	58.3
Bra022934.1-P	Field mustard	nucleus	52.03	58.26
CDX84693	Canola	nucleus	52.03	58.26
CDY19477	Canola	nucleus	50.18	57.87
CDY17158	Canola	nucleus	50.18	57.63
CDX79522	Canola	nucleus	52.03	57.32
VIT_05s0049g01970.t01	Wine grape	nucleus	66.79	56.39
AT1G04550.2	Thale cress	cytosol	49.08	55.65
Bra005508.1-P	Field mustard	nucleus	50.55	53.94
CDY59182	Canola	nucleus	44.28	53.33
CDY18243	Canola	nucleus	45.39	53.25
CDY53196	Canola	nucleus	44.28	52.86
CDX89814	Canola	nucleus	45.76	52.77
Bra015326.1-P	Field mustard	nucleus	45.76	52.77
PGSC0003DMT400022133	Potato	nucleus	49.82	42.86
PGSC0003DMT400052767	Potato	cytosol, extracellular, nucleus	13.65	40.66
Bra032503.1-P	Field mustard	nucleus	43.91	38.39
PGSC0003DMT400079375	Potato	cytosol	21.77	29.21
PGSC0003DMT400006709	Potato	nucleus	27.31	26.15
PGSC0003DMT400035770	Potato	cytosol	19.93	24.66

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	UniProt:M0ZMB4
InterPro:PB1_dom	PFAM:PF02309	EnsemblPlantsGene:PGSC0003DMG400001498	PGSC:PGSC0003DMG400001498	EnsemblPlants:PGSC0003DMT400003784	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI000295ED9B	SEG:seg	:

Description

Auxin-responsive protein IAA13 [Source:PGSC_GENE;Acc:PGSC0003DMG400001498]

Coordinates

chr9:-:57324200..57327713

Molecular Weight (calculated)

29292.7 Da

IEP (calculated)

8.991

GRAVY (calculated)

-0.655

Length

271 amino acids

Sequence
(BLAST)

001: MEQDYNMGIC SEDETELELG LGLSLNSGGG GGGVGGKTKK SPWGEYGRIL TAKDFPNGFS AKRSISGGVS GTKRAADFAG TTTEVGSPPT GASQVVGWPP
101: IRAYRMNSLV NQSKVLNADE DKGVGGNDKK EHSKKKINHG NTKDDAASVK EKGHLGFVKV NMDGLPIGRK VDLNAHTCYE SLAETLEDMF FKSTKSGEKE
201: QATKSFKLLD GSSEFVLTYE DKEGDWMLVG DVPFGMFLNT VKRLRIMRTS EANGLAPRIP QKQERHKGKP I

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.