Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006151 | |
| PGSC0003DMT400093571 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | PGSC0003DMT400006151 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | PGSC0003DMT400006151 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | PGSC0003DMT400093571 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G129000.1 | Wheat | nucleus | 39.56 | 43.9 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 95.6 | 35.95 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 37.36 | 33.33 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 42.86 | 32.77 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 43.96 | 27.59 |
| PGSC0003DMT400035770 | Potato | cytosol | 58.24 | 24.2 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 38.46 | 23.33 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 39.56 | 22.78 |
| PGSC0003DMT400079375 | Potato | cytosol | 48.35 | 21.78 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 37.36 | 21.25 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 51.65 | 20.7 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 39.56 | 20.69 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 38.46 | 20.35 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 37.36 | 20.24 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 38.46 | 19.77 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 38.46 | 19.77 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 37.36 | 19.77 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 37.36 | 19.43 |
| Os02t0805100-01 | Rice | nucleus | 38.46 | 19.23 |
| Os06t0166500-01 | Rice | nucleus | 38.46 | 19.13 |
| KXG31308 | Sorghum | cytosol | 39.56 | 18.27 |
| KXG19391 | Sorghum | nucleus | 40.66 | 18.14 |
| KRH52428 | Soybean | nucleus | 45.05 | 18.06 |
| Zm00001d000288_P001 | Maize | cytosol | 38.46 | 17.77 |
| CDX75231 | Canola | nucleus | 45.05 | 17.75 |
| Bra011332.1-P | Field mustard | nucleus | 45.05 | 17.75 |
| KRH61758 | Soybean | nucleus | 43.96 | 17.7 |
| Zm00001d045203_P001 | Maize | cytosol | 41.76 | 17.59 |
| CDX68829 | Canola | nucleus | 42.86 | 17.11 |
| Zm00001d018414_P001 | Maize | nucleus | 38.46 | 16.99 |
| AT4G32280.1 | Thale cress | cytosol | 45.05 | 16.33 |
| CDX72351 | Canola | nucleus | 43.96 | 16.19 |
| CDY13478 | Canola | nucleus | 42.86 | 16.05 |
| Bra023958.1-P | Field mustard | nucleus | 42.86 | 16.05 |
| PGSC0003DMT400075427 | Potato | nucleus | 37.36 | 14.66 |
| PGSC0003DMT400003784 | Potato | nucleus | 40.66 | 13.65 |
| PGSC0003DMT400022133 | Potato | nucleus | 42.86 | 12.38 |
| PGSC0003DMT400006709 | Potato | nucleus | 36.26 | 11.66 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | UniProt:M1BTY4 |
| InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400020478 | PGSC:PGSC0003DMG400020478 | EnsemblPlants:PGSC0003DMT400052767 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 | SUPFAM:SSF54277 | UniParc:UPI00029641D9 | : | : |
Description
ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020478]
Coordinates
chr6:-:45730210..45730958
Molecular Weight (calculated)
10698.8 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.582
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MEGVAIGRKI DLMLYNSYQI LTNTLLQMFH KSHESCDEND GRFTLLYQDK EGDWMLAGDV PWETFMETVQ RIQILRNWKS GRSTRKSSHI S
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYERIT AMNNNISNPT
101: TATVGSSSSS SISSRSSMYV KVKMDGVAIA RKVDIKLFNS YESLTNSLIT MFTEYEDCDR EDTNYTFTFQ GKEGDWLLRG DVTWKIFAES VHRISIIRDR
201: PCAYTRCLF
101: TATVGSSSSS SISSRSSMYV KVKMDGVAIA RKVDIKLFNS YESLTNSLIT MFTEYEDCDR EDTNYTFTFQ GKEGDWLLRG DVTWKIFAES VHRISIIRDR
201: PCAYTRCLF
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.