Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g064530.2.1 | Tomato | nucleus | 90.48 | 89.06 |
| VIT_07s0005g04380.t01 | Wine grape | nucleus | 52.06 | 53.59 |
| KRH32251 | Soybean | nucleus | 46.67 | 51.22 |
| KRH19625 | Soybean | nucleus | 47.3 | 51.2 |
| PGSC0003DMT400003784 | Potato | nucleus | 42.86 | 49.82 |
| PGSC0003DMT400075427 | Potato | nucleus | 36.51 | 49.57 |
| KRH67461 | Soybean | nucleus | 38.1 | 48.98 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 12.38 | 42.86 |
| KRG95739 | Soybean | nucleus | 34.29 | 40.15 |
| PGSC0003DMT400079375 | Potato | cytosol | 18.73 | 29.21 |
| PGSC0003DMT400006709 | Potato | nucleus | 24.76 | 27.56 |
| PGSC0003DMT400035770 | Potato | cytosol | 16.51 | 23.74 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | UniProt:M1AG89 |
| InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400008586 | PGSC:PGSC0003DMG400008586 | EnsemblPlants:PGSC0003DMT400022133 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 | UniParc:UPI000295C96B | SEG:seg | : |
Description
Auxin-responsive protein IAA13 [Source:PGSC_GENE;Acc:PGSC0003DMG400008586]
Coordinates
chr9:-:46204356..46209935
Molecular Weight (calculated)
33454.5 Da
IEP (calculated)
8.779
GRAVY (calculated)
-0.320
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLGGVTYGV SIGGSICTVS KEDNIGVLLS SEASSSYPDE TELELGLGLS LGASAAAGDV IPKSKTGSRG CYAKILTPKK DFSSLGSNSS SSCSSSSAIK
101: ANNASCGTKR TADSISPPRS SVSQVVGWPP IRTYRMNTLV NQTKPPPPEE FSVTNEKCKS KNTITNAGSS KINNFAKEKG LVKASLFVKV NLDGVTIGRK
201: VDLNAHSSYE NLARTLDNMF LRPSTTVCAR SSNAQELGVM SETAFSSRLL DGSSEFVLTY EDKEGDWMLV GDVPWEMFIS SVKRLRIMRT SDANGLGTSP
301: SFMERNDGRP GTKPI
101: ANNASCGTKR TADSISPPRS SVSQVVGWPP IRTYRMNTLV NQTKPPPPEE FSVTNEKCKS KNTITNAGSS KINNFAKEKG LVKASLFVKV NLDGVTIGRK
201: VDLNAHSSYE NLARTLDNMF LRPSTTVCAR SSNAQELGVM SETAFSSRLL DGSSEFVLTY EDKEGDWMLV GDVPWEMFIS SVKRLRIMRT SDANGLGTSP
301: SFMERNDGRP GTKPI
001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV
Arabidopsis Description
IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.