CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95739	Soybean	nucleus	77.55	70.63
KRH32251	Soybean	nucleus	62.86	53.66
KRH19625	Soybean	nucleus	62.86	52.92
VIT_07s0005g04380.t01	Wine grape	nucleus	53.47	42.81
PGSC0003DMT400022133	Potato	nucleus	48.98	38.1
Solyc09g064530.2.1	Tomato	nucleus	48.57	37.19
KRH33660	Soybean	plastid	24.9	34.46
KRH69143	Soybean	plastid	24.49	33.33
KRG96613	Soybean	plastid	23.27	32.2
KRH68346	Soybean	plastid	23.27	31.67
KRH03666	Soybean	cytosol	23.27	28.64
KRH20139	Soybean	nucleus	24.08	28.64
KRH19441	Soybean	endoplasmic reticulum, vacuole	26.53	26.64
KRH02508	Soybean	endoplasmic reticulum, extracellular, plasma membrane	26.12	24.62
KRH09948	Soybean	nucleus	30.61	23.44
KRH61758	Soybean	nucleus	20.0	21.68
KRH23388	Soybean	nucleus	30.61	21.68
KRH52428	Soybean	nucleus	20.0	21.59
KRH47203	Soybean	nucleus	26.94	20.82
KRH44271	Soybean	nucleus	26.53	20.77

Protein Annotations

EntrezGene:100789143	Gene3D:3.10.20.90	MapMan:35.1	EMBL:ACUP02002059	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlantsGene:GLYMA_03G167400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:K7KFJ3	EnsemblPlants:KRH67461	ProteinID:KRH67461	ProteinID:KRH67461.1
InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277
UniParc:UPI0002951AEB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:38174257..38178538

Molecular Weight (calculated)

26460.0 Da

IEP (calculated)

7.665

GRAVY (calculated)

-0.444

Length

245 amino acids

Sequence
(BLAST)

001: MSKDDNSSSL DSSSSDLQLS LSLTLSPYAT TSSPSSISHS CSAALATAAS QVVGWPPLGA YRMNIYNSQA KSPATEVFNS TVDNKRASNS TGVRKTADGG
101: SDSSNIIFKE KGNLRSSLFV KVKMDGIPIG RKVDLGAHGS YETLAQTLED MFDESATVLT HKVGSNGEDH GTEVGADGHS KLLHGSSDLV LTYEDKEGDW
201: MLVGDVPWWM FLNSVRRLRI MRTPEANGLA PRLKEKNRRS KCKLI

Best Arabidopsis Sequence Match ( AT4G28640.1 )
(BLAST)

001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KAQMIL

Arabidopsis Description

IAA11Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A8MR39]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.