Factsheet for VIT_07s0005g04380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19625	Soybean	nucleus	59.15	62.2
KRH32251	Soybean	nucleus	57.52	61.32
VIT_05s0049g01970.t01	Wine grape	nucleus	59.15	56.39
KRH67461	Soybean	nucleus	42.81	53.47
PGSC0003DMT400022133	Potato	nucleus	53.59	52.06
Solyc09g064530.2.1	Tomato	nucleus	52.94	50.62
KRG95739	Soybean	nucleus	39.54	44.98
VIT_07s0005g02550.t01	Wine grape	plastid	23.2	40.57
VIT_05s0020g01070.t01	Wine grape	plastid	22.88	35.35
VIT_11s0016g05640.t01	Wine grape	cytosol	18.63	30.98
VIT_04s0008g05560.t01	Wine grape	extracellular	18.95	25.55
VIT_04s0008g00220.t01	Wine grape	nucleus	27.12	24.06
VIT_09s0002g03410.t01	Wine grape	nucleus	29.74	20.73

Protein Annotations

EntrezGene:100244630	wikigene:100244630	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CCB60177	ProteinID:CCB60177.1	UniProt:F6HZR1	EMBL:FN596502	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100244630
wikigene:LOC100244630	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF48
SUPFAM:SSF54277	UniParc:UPI000210A2C7	ArrayExpress:VIT_07s0005g04380	EnsemblPlantsGene:VIT_07s0005g04380	EnsemblPlants:VIT_07s0005g04380.t01	RefSeq:XP_002269922
RefSeq:XP_002269922.2	RefSeq:XP_010652422.1	SEG:seg	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6HZR1]

Coordinates

chr7:+:7467838..7475020

Molecular Weight (calculated)

32655.2 Da

IEP (calculated)

8.162

GRAVY (calculated)

-0.548

Length

306 amino acids

Sequence
(BLAST)

001: MDGGSGGGVC TSGSMSTVSK EDNLMVSTEV SSYPDEAELE LGLGLSLGGG GGGGGGVKPQ EQGWAQYGRI LTAKDFPSTV SSSSSSSSSL SRANRTTVGT
101: KRRADSVAAS NNGSQVVGWP PIRAYRMNSL ANQSKSLVTE DLNSMVEKSK STNTMVENTY NGSNNTNGYA KKKGPLNTSF FVKVNMDGIP IGRKVDLSAH
201: SCYETLAKTL EEMFQGPTTT VNAIGSSNEN YDAMTESTRP SKLLDGSSDF VLTYEDKEGD WMLVGDVPWG MFLGSARRLR IMRTSDANGL APRIQERNGR
301: QRSMRI

Best Arabidopsis Sequence Match ( AT4G28640.1 )
(BLAST)

001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KAQMIL

Arabidopsis Description

IAA11Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A8MR39]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.