Factsheet for VIT_11s0016g05640.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G129000.1	Wheat	nucleus	20.65	46.34
PGSC0003DMT400079375	Potato	cytosol	50.54	46.04
Solyc07g008020.2.1	Tomato	cytosol	48.91	45.92
TraesCS7D01G128200.1	Wheat	cytosol, mitochondrion	25.0	45.1
GSMUA_Achr9P26900_001	Banana	plastid	26.63	41.18
GSMUA_Achr9P26910_001	Banana	nucleus	29.89	37.93
VIT_04s0008g05560.t01	Wine grape	extracellular	41.85	33.92
KRH20139	Soybean	nucleus	37.5	33.5
TraesCS7D01G127900.1	Wheat	nucleus	27.17	33.33
KRH03666	Soybean	cytosol	35.87	33.17
TraesCS7D01G127800.1	Wheat	cytosol	27.72	32.28
TraesCS7D01G128100.1	Wheat	nucleus	27.17	31.25
HORVU7Hr1G026970.2	Barley	cytosol	27.17	29.76
TraesCS7B01G029000.1	Wheat	cytosol	27.72	29.65
TraesCS7B01G029100.1	Wheat	nucleus	27.17	28.25
HORVU6Hr1G088140.2	Barley	cytosol, mitochondrion, nucleus	26.63	28.16
Os06t0166500-01	Rice	nucleus	27.17	27.32
TraesCS6B01G411000.1	Wheat	cytosol, mitochondrion, nucleus	25.0	25.99
KXG19391	Sorghum	nucleus	28.8	25.98
VIT_07s0005g02550.t01	Wine grape	plastid	24.46	25.71
TraesCS6D01G357500.1	Wheat	cytosol, mitochondrion, nucleus	23.91	25.58
KXG31308	Sorghum	cytosol	27.17	25.38
Zm00001d000288_P001	Maize	cytosol	27.17	25.38
TraesCS6A01G373300.1	Wheat	cytosol, nucleus, plastid	23.91	25.14
Zm00001d018414_P001	Maize	nucleus	27.72	24.76
Os02t0805100-01	Rice	nucleus	24.46	24.73
Zm00001d045203_P001	Maize	cytosol	28.8	24.54
VIT_05s0020g01070.t01	Wine grape	plastid	23.91	22.22
VIT_07s0005g04380.t01	Wine grape	nucleus	30.98	18.63
VIT_05s0049g01970.t01	Wine grape	nucleus	27.72	15.89
VIT_04s0008g00220.t01	Wine grape	nucleus	23.37	12.46
VIT_09s0002g03410.t01	Wine grape	nucleus	24.46	10.25

Protein Annotations

EntrezGene:100266398	wikigene:100266398	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CBI28230	ProteinID:CBI28230.3	UniProt:D7TC45	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100266398
wikigene:LOC100266398	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF38
SUPFAM:SSF54277	TIGR:TC66108	UniParc:UPI0001BE335E	ArrayExpress:VIT_11s0016g05640	EnsemblPlantsGene:VIT_11s0016g05640	EnsemblPlants:VIT_11s0016g05640.t01
unigene:Vvi.3810	RefSeq:XP_002285354	RefSeq:XP_002285354.1	SEG:seg	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7TC45]

Coordinates

chr11:-:5095999..5097491

Molecular Weight (calculated)

20840.8 Da

IEP (calculated)

9.698

GRAVY (calculated)

-0.681

Length

184 amino acids

Sequence
(BLAST)

001: MISGRSNKKR GFIEAFELPP QTLPLLLWND HPNDDDDDDD RKGVENSSFI AKKNDDGYCI VGWPPIKFRR KKICSHNRDD NDRTVLHNGS ARAGVGGGVN
101: PNSKYVKVKM VGVGIARKID LSRHHSYQTL TNTLINMFGK CQQDAQSFKL AYQDREGDWL LAGDVPWRTF IQSVERLKIL RIGG

Best Arabidopsis Sequence Match ( AT4G32280.1 )
(BLAST)

001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F

Arabidopsis Description

IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.