Factsheet for VIT_04s0008g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	33.04	50.0
TraesCS1A01G122600.2	Wheat	nucleus	31.88	48.89
TraesCS1D01G123500.1	Wheat	nucleus	31.59	48.02
Zm00001d039513_P001	Maize	cytosol, nucleus, plastid	30.43	45.85
Os01t0190300-01	Rice	nucleus	31.59	45.8
Zm00001d010360_P001	Maize	cytosol, nucleus	30.14	45.61
TraesCS3B01G127400.1	Wheat	nucleus	30.14	45.22
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	30.43	44.68
TraesCS3D01G276600.1	Wheat	cytosol, mitochondrion, nucleus	42.32	43.58
TraesCS3D01G110200.1	Wheat	nucleus	28.99	43.48
EES17832	Sorghum	nucleus	30.43	43.39
HORVU1Hr1G028170.4	Barley	cytosol, nucleus, plastid	31.01	43.32
HORVU3Hr1G019750.4	Barley	cytosol, nucleus, plastid	30.72	43.27
Os01t0741900-01	Rice	nucleus	41.16	42.39
TraesCS3A01G276500.1	Wheat	cytosol, mitochondrion, nucleus	41.74	42.23
TraesCS3B01G310500.1	Wheat	cytosol, mitochondrion, nucleus	41.74	41.98
HORVU3Hr1G070620.5	Barley	cytosol, mitochondrion, nucleus	42.9	41.93
TraesCS1A01G343300.1	Wheat	nucleus	35.65	41.84
Zm00001d037691_P003	Maize	cytosol, nucleus	29.86	41.7
TraesCS1D01G345400.1	Wheat	nucleus	35.65	41.69
VIT_09s0002g03410.t01	Wine grape	nucleus	52.75	41.46
TraesCS3A01G108400.1	Wheat	cytosol, nucleus, peroxisome	30.14	41.27
TraesCS1B01G356600.1	Wheat	cytosol	35.07	40.74
Os02t0228900-01	Rice	nucleus	35.36	40.67
Zm00001d043515_P002	Maize	cytosol, mitochondrion, nucleus	40.58	39.22
Os05t0523300-01	Rice	nucleus	37.1	39.14
OQU84670	Sorghum	nucleus	32.46	38.36
GSMUA_AchrUn_...	Banana	nucleus	33.91	37.99
KXG33336	Sorghum	nucleus	40.0	37.81
Zm00001d016277_P002	Maize	nucleus	32.46	37.46
GSMUA_Achr7P13680_001	Banana	nucleus	39.71	37.33
KXG22376	Sorghum	nucleus	37.1	37.1
Zm00001d038784_P001	Maize	nucleus	37.39	36.54
VIT_07s0005g02550.t01	Wine grape	plastid	16.23	32.0
OQU86163	Sorghum	golgi, plastid	32.17	31.01
VIT_05s0020g01070.t01	Wine grape	plastid	15.65	27.27
VIT_07s0005g04380.t01	Wine grape	nucleus	24.06	27.12
VIT_05s0049g01970.t01	Wine grape	nucleus	24.35	26.17
VIT_04s0008g05560.t01	Wine grape	extracellular	15.65	23.79
VIT_11s0016g05640.t01	Wine grape	cytosol	12.46	23.37

Protein Annotations

EntrezGene:100247345	wikigene:100247345	MapMan:11.2.2.1.2	Gene3D:3.10.20.90	EMBL:AM435015	InterPro:AUX/IAA_dom
InterPro:AUX_IAA	ProteinID:CAN69376	ProteinID:CAN69376.1	ProteinID:CCB46517	ProteinID:CCB46517.1	UniProt:F6H361
EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100247345	wikigene:LOC100247345	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF2	SUPFAM:SSF54277	UniParc:UPI0001982E55	ArrayExpress:VIT_04s0008g00220
EnsemblPlantsGene:VIT_04s0008g00220	EnsemblPlants:VIT_04s0008g00220.t01	RefSeq:XP_002277798	RefSeq:XP_002277798.1	RefSeq:XP_010648285.1	SEG:seg

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6H361]

Coordinates

chr4:+:162909..165200

Molecular Weight (calculated)

38018.7 Da

IEP (calculated)

8.085

GRAVY (calculated)

-0.677

Length

345 amino acids

Sequence
(BLAST)

001: MEESPQWLNM IPKDREWHAR ESKRRHGVSE DKKLELRLGP PGEDRSLLSL SYLPSMASIT HLHTNSHGAK RGFQDTLEAK PWPRVSLSSS SSAFEKQNHQ
101: PKSSYLQYPV VPQTLGAIVD ESSKPRPTSM ADQAQQYKDK MACSVAADAS VSANTAVPNS SQKRIEHAPV VGWPPIRSFR KNLVNSSSSK PESESPNKIP
201: EETGYGKSES SKTGLFVKIN MDGVPIGRKV DLKACDSYEK LSYAVDDLFR GLLSAQNESS AGTGNENKME EAKTMAGLFD GSGEYTLVYE DNEGDRMLVG
301: DVPWHMFVST VRRLRVLKSS ELAILCVSSS KQEKPPPGSA VEFGK

Best Arabidopsis Sequence Match ( AT3G16500.1 )
(BLAST)

001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH

Arabidopsis Description

IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.