Factsheet for VIT_05s0020g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g02550.t01	Wine grape	plastid	56.06	63.43
GSMUA_Achr8P29850_001	Banana	nucleus	55.05	61.93
Os01t0286900-01	Rice	nucleus	29.8	51.3
GSMUA_Achr9P16800_001	Banana	nucleus	44.95	51.15
EES00605	Sorghum	nucleus, plastid	48.99	50.26
KRH19441	Soybean	endoplasmic reticulum, vacuole	59.6	48.36
Zm00001d040541_P001	Maize	nucleus, plastid	43.94	48.07
KRH02508	Soybean	endoplasmic reticulum, extracellular, plasma membrane	60.1	45.77
Os02t0723400-02	Rice	nucleus	41.41	40.0
TraesCS1D01G084100.1	Wheat	nucleus, plastid	41.41	39.61
Zm00001d008201_P001	Maize	cytosol	23.74	36.15
TraesCS1B01G100300.1	Wheat	plastid	42.42	35.44
TraesCS1A01G082700.2	Wheat	plastid	43.94	33.08
HORVU1Hr1G017770.6	Barley	cytosol, mitochondrion, vacuole	33.33	31.88
VIT_11s0016g05640.t01	Wine grape	cytosol	22.22	23.91
VIT_07s0005g04380.t01	Wine grape	nucleus	35.35	22.88
VIT_04s0008g05560.t01	Wine grape	extracellular	23.23	20.26
VIT_05s0049g01970.t01	Wine grape	nucleus	32.83	20.25
VIT_04s0008g00220.t01	Wine grape	nucleus	27.27	15.65
VIT_09s0002g03410.t01	Wine grape	nucleus	26.77	12.07

Protein Annotations

EntrezGene:100244346	wikigene:100244346	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CBI26035	ProteinID:CBI26035.3	UniProt:D7T6B4	EMBL:FN595749	GO:GO:0000228	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
GO:GO:0016043	InterPro:IPR000270	EntrezGene:LOC100244346	wikigene:LOC100244346	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF3	SUPFAM:SSF54277	UniParc:UPI00015C7875	ArrayExpress:VIT_05s0020g01070
EnsemblPlantsGene:VIT_05s0020g01070	EnsemblPlants:VIT_05s0020g01070.t01	RefSeq:XP_002275515	RefSeq:XP_002275515.1	SEG:seg	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7T6B4]

Coordinates

chr5:-:2845633..2846772

Molecular Weight (calculated)

21386.2 Da

IEP (calculated)

8.832

GRAVY (calculated)

-0.383

Length

198 amino acids

Sequence
(BLAST)

001: MGGGAATPHS SSSSSSSSSS SIDSISNNHP SLSSASSSIS LPPNTKRSGL STDLRLGPSI STAHIHHCSS SAPSPRDQRV DWPPIKPLLR STLTGKADNQ
101: RQATNLFVKV YMEGISIGRK LDLFAYSGYD GLVATLSHMF KTTIFCSDPH VGGADHSGKY HILTYEDKEG DWMMVGDVPW EMFLTTVKRL KITRADRC

Best Arabidopsis Sequence Match ( AT3G17600.1 )
(BLAST)

001: MEVSNSCSSF SSSSVDSTKP SPSESSVNLS LSLTFPSTSP QREARQDWPP IKSRLRDTLK GRRLLRRGDD TSLFVKVYME GVPIGRKLDL CVFSGYESLL
101: ENLSHMFDTS IICGNRDRKH HVLTYEDKDG DWMMVGDIPW DMFLETVRRL KITRPERY

Arabidopsis Description

IAA31Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178V8S2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.