Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 75.95 | 86.96 |
| TraesCS1A01G082700.2 | Wheat | plastid | 78.9 | 71.1 |
| Os02t0723400-02 | Rice | nucleus | 47.68 | 55.12 |
| VIT_07s0005g02550.t01 | Wine grape | plastid | 35.02 | 47.43 |
| CDY46895 | Canola | cytosol | 13.92 | 45.83 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 39.66 | 45.41 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 33.33 | 45.4 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 33.33 | 44.89 |
| Bra021257.1-P | Field mustard | cytosol | 13.5 | 44.44 |
| Bra022224.1-P | Field mustard | nucleus, plastid | 28.69 | 43.04 |
| CDX92140 | Canola | nucleus, plastid | 28.69 | 43.04 |
| KRH33660 | Soybean | plastid | 32.07 | 42.94 |
| CDX95843 | Canola | plastid | 27.85 | 42.58 |
| VIT_05s0020g01070.t01 | Wine grape | plastid | 35.44 | 42.42 |
| CDY71609 | Canola | nucleus, plastid | 27.85 | 42.04 |
| KRH69143 | Soybean | plastid | 31.65 | 41.67 |
| CDX82361 | Canola | cytosol, plastid | 27.43 | 41.4 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 27.43 | 41.14 |
| AT3G62100.1 | Thale cress | plastid | 29.54 | 40.7 |
| CDY58757 | Canola | plastid | 29.54 | 40.7 |
| Bra003484.1-P | Field mustard | nucleus, plastid | 29.11 | 40.12 |
| CDY25089 | Canola | plastid | 29.11 | 39.88 |
| CDX67874 | Canola | plastid | 29.11 | 39.88 |
| Bra001670.1-P | Field mustard | nucleus | 24.89 | 39.86 |
| KRH68346 | Soybean | plastid | 29.54 | 38.89 |
| Bra040476.1-P | Field mustard | cytosol, plastid | 28.27 | 38.51 |
| CDY48005 | Canola | cytosol, plastid | 28.27 | 38.51 |
| CDY11402 | Canola | plastid | 28.69 | 38.42 |
| KRG96613 | Soybean | plastid | 28.69 | 38.42 |
| Bra007661.1-P | Field mustard | plastid | 28.69 | 38.42 |
| AT2G46990.1 | Thale cress | plastid | 28.27 | 38.29 |
| CDY27511 | Canola | cytosol, plastid | 27.85 | 37.93 |
| Bra014411.1-P | Field mustard | nucleus, plastid | 18.99 | 35.71 |
| KRH19441 | Soybean | endoplasmic reticulum, vacuole | 33.76 | 32.79 |
| KRH02508 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 33.76 | 30.77 |
| CDY46058 | Canola | plastid | 20.25 | 28.74 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 20.25 | 27.12 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 18.99 | 25.42 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 17.72 | 24.42 |
| TraesCS7B01G222900.1 | Wheat | nucleus | 20.25 | 19.05 |
| TraesCS6B01G432800.1 | Wheat | nucleus | 20.25 | 17.33 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 16.03 | 16.52 |
| TraesCS4B01G108600.2 | Wheat | nucleus | 20.25 | 13.33 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 16.46 | 13.13 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 17.3 | 11.95 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF15 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS1B01G100300 | EnsemblPlants:TraesCS1B01G100300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1B:-:108302245..108303286
Molecular Weight (calculated)
25459.4 Da
IEP (calculated)
8.032
GRAVY (calculated)
-0.084
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MECKAAREPS SSAPSSSMDS CGAGGPRATV STASSFYRPA IDRGLSTDLH LGLSLRSCSS SFHAADGVSA STPRSLQARD FISEIKLLVH HFASVDLWLS
101: AHKPTHPTCR LLRSALTTTA GPAYETGGGG GSHGQQLLFV KVYMEGVPIG RKLDLLLLDG YDDLLAILGR MFKASIIHPD TIGRDHRVVL GEKQARHVVT
201: YQDQEGDWLM AGDLPWALFL ASVKKLKIAR VDSSISD
101: AHKPTHPTCR LLRSALTTTA GPAYETGGGG GSHGQQLLFV KVYMEGVPIG RKLDLLLLDG YDDLLAILGR MFKASIIHPD TIGRDHRVVL GEKQARHVVT
201: YQDQEGDWLM AGDLPWALFL ASVKKLKIAR VDSSISD
001: MGRGRSSSSS SIESSSKSNP FGASSSTRNL STDLRLGLSF GTSSGTQYFN GGYGYSVAAP AVEDAEYVAA VEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY
Arabidopsis Description
IAA20Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W181]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.