Factsheet for TraesCS4B01G108600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G204900.1	Wheat	nucleus	92.5	92.24
HORVU4Hr1G016160.1	Barley	plastid	87.5	87.74
TraesCS4D01G105700.1	Wheat	cytosol	90.83	86.97
KXG28215	Sorghum	nucleus	53.89	54.19
Os11t0221000-01	Rice	nucleus	41.11	51.39
Zm00001d049141_P002	Maize	nucleus	49.17	49.86
Zm00001d004697_P001	Maize	nucleus	48.06	49.57
TraesCS7B01G222900.1	Wheat	nucleus	20.56	29.37
GSMUA_Achr9P08370_001	Banana	nucleus	19.72	27.95
TraesCS7B01G029000.1	Wheat	cytosol	13.33	27.91
TraesCS3B01G127400.1	Wheat	nucleus	17.78	27.83
TraesCS6B01G411000.1	Wheat	cytosol, mitochondrion, nucleus	13.61	27.68
TraesCS7B01G029100.1	Wheat	nucleus	13.06	26.55
GSMUA_Achr6P29100_001	Banana	nucleus	20.83	25.34
TraesCS1B01G356600.1	Wheat	cytosol	20.28	24.58
TraesCS6B01G432800.1	Wheat	nucleus	17.22	22.38
TraesCS3B01G310500.1	Wheat	cytosol, mitochondrion, nucleus	19.44	20.41
TraesCS1B01G100300.1	Wheat	plastid	13.33	20.25

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000270
InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF35	SUPFAM:SSF54277
EnsemblPlantsGene:TraesCS4B01G108600	EnsemblPlants:TraesCS4B01G108600.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:+:119339274..119345885

Molecular Weight (calculated)

37935.5 Da

IEP (calculated)

7.792

GRAVY (calculated)

-0.309

Length

360 amino acids

Sequence
(BLAST)

001: MMNLISFETP PPLGRQESTA ATAATGMKVA KEASSSDACF HGSNLDLSLG ISLSPGGNCS AASCGGAAMA SYNGRQGGGN VGRVQSSDMV IASTATANTL
101: SAGRGGNCHG IVPSSSWAAV FMPSPTGFMH PWSLAARQQK AAAEQDRNIA PASVATTYVT SDASVVSVPS AAVGWPPVHT SRRHLVTATH VPKPDAGVKQ
201: PDGPKNTKIP TAASPADDDK EVAGTPRSYT VTAEPQRLQA NMFAKVHMDG CLIVRKINLR AHRSYDSLSR ALTRMTRNFF CPADYRSSDS GEGDCANSDD
301: FIFLYEDFEG DRMLVGDVPW ELFLATAKKL CISRHPTSRD TKGHDEAAKL DASVKIATNN

Best Arabidopsis Sequence Match ( AT1G51950.1 )
(BLAST)

001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR

Arabidopsis Description

IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.