Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G127900.1 | Wheat | nucleus | 77.33 | 88.67 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 76.16 | 77.98 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 76.16 | 74.01 |
| Os06t0166500-01 | Rice | nucleus | 56.4 | 53.01 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 35.47 | 51.26 |
| Zm00001d000288_P001 | Maize | cytosol | 56.98 | 49.75 |
| Zm00001d045203_P001 | Maize | cytosol | 58.14 | 46.3 |
| KXG19391 | Sorghum | nucleus | 54.65 | 46.08 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 46.51 | 45.2 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 37.21 | 44.14 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 20.35 | 38.46 |
| KRH03666 | Soybean | cytosol | 33.72 | 29.15 |
| KRH20139 | Soybean | nucleus | 33.72 | 28.16 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 36.63 | 27.75 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 29.65 | 27.72 |
| PGSC0003DMT400035770 | Potato | cytosol | 34.88 | 27.4 |
| Solyc08g021820.2.1 | Tomato | nucleus | 35.47 | 26.87 |
| PGSC0003DMT400079375 | Potato | cytosol | 30.81 | 26.24 |
| KRH52428 | Soybean | nucleus | 33.72 | 25.55 |
| Solyc07g008020.2.1 | Tomato | cytosol | 29.07 | 25.51 |
| KRH61758 | Soybean | nucleus | 32.56 | 24.78 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 33.72 | 23.97 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 31.4 | 23.48 |
| TraesCS6B01G432800.1 | Wheat | nucleus | 34.3 | 21.3 |
| TraesCS7B01G222900.1 | Wheat | nucleus | 29.65 | 20.24 |
| AT4G32280.1 | Thale cress | cytosol | 29.07 | 19.92 |
| CDX68829 | Canola | nucleus | 26.16 | 19.74 |
| CDX75231 | Canola | nucleus | 26.16 | 19.48 |
| Bra011332.1-P | Field mustard | nucleus | 26.16 | 19.48 |
| CDX72351 | Canola | nucleus | 27.91 | 19.43 |
| CDY13478 | Canola | nucleus | 27.33 | 19.34 |
| Bra023958.1-P | Field mustard | nucleus | 27.33 | 19.34 |
| TraesCS1B01G100300.1 | Wheat | plastid | 24.42 | 17.72 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 29.07 | 16.84 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 30.81 | 15.45 |
| TraesCS4B01G108600.2 | Wheat | nucleus | 27.91 | 13.33 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF38 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS7B01G029000 | EnsemblPlants:TraesCS7B01G029000.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7B:-:27486096..27487114
Molecular Weight (calculated)
18823.2 Da
IEP (calculated)
7.137
GRAVY (calculated)
-0.674
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLAPP NHAGSCGKRG VAEAFGIKKP TLPLFLGDDD DDGGHGHGED GTGDTRDWEM GSKRRRLVGW PPVKIGHRPR SNGHVKVKME GVPIGRKVDL
101: SRHASYHQLH HTLRLMFPSS TSHHGDPYAV TYEDGDGDWM LVGDVPWEEF SKSARRLNIL MSPPTTTLGT AG
101: SRHASYHQLH HTLRLMFPSS TSHHGDPYAV TYEDGDGDWM LVGDVPWEEF SKSARRLNIL MSPPTTTLGT AG
001: MAYEKVNELN LKDTELCLGL PGRTEKIKEE QEVSCVKSNN KRLFEETRDE EESTPPTKTQ IVGWPPVRSS RKNNNSVSYV KVSMDGAPYL RKIDLKTYKN
101: YPELLKALEN MFKVMIGEYC EREGYKGSGF VPTYEDKDGD WMLVGDVPWD MFSSSCKRLR IMKGSDAPAL DSSL
101: YPELLKALEN MFKVMIGEYC EREGYKGSGF VPTYEDKDGD WMLVGDVPWD MFSSSCKRLR IMKGSDAPAL DSSL
Arabidopsis Description
IAA2Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ54]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.