Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G392600.3 | Wheat | cytosol, nucleus, plastid | 94.22 | 91.58 |
| TraesCS6D01G378300.1 | Wheat | cytosol, nucleus, plastid | 92.78 | 90.81 |
| HORVU6Hr1G091260.3 | Barley | nucleus | 88.09 | 86.83 |
| Os02t0817600-02 | Rice | nucleus | 76.9 | 75.8 |
| KXG31359 | Sorghum | cytosol, nucleus, peroxisome | 75.45 | 70.61 |
| Zm00001d051911_P002 | Maize | nucleus | 74.73 | 70.41 |
| GSMUA_Achr11P... | Banana | nucleus | 42.24 | 39.0 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 23.1 | 36.16 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 21.3 | 34.3 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 21.66 | 33.9 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 23.1 | 27.83 |
| TraesCS7B01G222900.1 | Wheat | nucleus | 23.47 | 25.79 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 24.55 | 22.9 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 26.71 | 21.57 |
| TraesCS1B01G100300.1 | Wheat | plastid | 17.33 | 20.25 |
| TraesCS4B01G108600.2 | Wheat | nucleus | 22.38 | 17.22 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS6B01G432800 | EnsemblPlants:TraesCS6B01G432800.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6B:+:701975108..701976963
Molecular Weight (calculated)
29234.5 Da
IEP (calculated)
7.389
GRAVY (calculated)
-0.495
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGPGGGVGP GEPPPAAEEV VEENSGGEEE LELGLCLGSR KLQLLQQPAP PAPCRILTAR DLQPAAALSP DSSVSSSSPA AAKADDGPAP AASPGTLASG
101: HPQSSFGVVG WPPIRTFRMN SLFGQAKDNA SDAETKKAAA DGSGSRKDKE EAEKKGRVPG WVKVNMDGEV IGRKVDLNAH RSYKTLALAL EIMFTKPSAG
201: LCASNSTKSL KLLDSSCEYQ MTYEDRDGDW MLVGDVPWEM FVGSVKRLRI MRTSDASGLG PRFQANHRTA ASTRGRT
101: HPQSSFGVVG WPPIRTFRMN SLFGQAKDNA SDAETKKAAA DGSGSRKDKE EAEKKGRVPG WVKVNMDGEV IGRKVDLNAH RSYKTLALAL EIMFTKPSAG
201: LCASNSTKSL KLLDSSCEYQ MTYEDRDGDW MLVGDVPWEM FVGSVKRLRI MRTSDASGLG PRFQANHRTA ASTRGRT
001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV
Arabidopsis Description
IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.