Factsheet for GSMUA_Achr11P02310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04230_001	Banana	nucleus	46.67	46.05
Os02t0817600-02	Rice	nucleus	42.0	44.84
GSMUA_Achr10P...	Banana	nucleus	45.67	44.19
GSMUA_AchrUn_...	Banana	nucleus	46.0	44.09
TraesCS6B01G432800.1	Wheat	nucleus	39.0	42.24
Zm00001d051911_P002	Maize	nucleus	41.33	42.18
TraesCS6A01G392600.3	Wheat	cytosol, nucleus, plastid	39.0	41.05
TraesCS6D01G378300.1	Wheat	cytosol, nucleus, plastid	38.67	40.99
HORVU6Hr1G091260.3	Barley	nucleus	38.33	40.93
KXG31359	Sorghum	cytosol, nucleus, peroxisome	40.33	40.88
GSMUA_Achr9P26900_001	Banana	plastid	16.0	40.34
GSMUA_Achr9P26910_001	Banana	nucleus	17.33	35.86
GSMUA_Achr8P29850_001	Banana	nucleus	20.0	34.09
GSMUA_Achr9P16800_001	Banana	nucleus	19.33	33.33
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	23.33	29.79
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	22.33	29.39
GSMUA_Achr7P03120_001	Banana	nucleus	19.33	23.58
GSMUA_AchrUn_...	Banana	nucleus	23.67	23.05
GSMUA_Achr7P13680_001	Banana	nucleus	27.0	22.07
GSMUA_Achr6P29100_001	Banana	nucleus	18.67	18.92
GSMUA_Achr9P08370_001	Banana	nucleus	15.0	17.72

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G02310_001	EnsemblPlants:GSMUA_Achr11P02310_001
EnsemblPlants:GSMUA_Achr11T02310_001	InterPro:IPR000270	UniProt:M0RNR1	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI000296DAA1	SEG:seg	:

Description

Auxin-responsive protein IAA10 [Source:GMGC_GENE;Acc:GSMUA_Achr11G02310_001]

Coordinates

chr11:+:1593516..1599029

Molecular Weight (calculated)

31944.8 Da

IEP (calculated)

7.851

GRAVY (calculated)

-0.344

Length

300 amino acids

Sequence
(BLAST)

001: MATPEAAVAE EDMVGKDYVG ISEVSSSSYP GSAGVGGGMD EEEELELGLS LGTKKAVGGG GTPWADYCRI LTAEDLPSMG SRASPLSSSS SVSSSSSPIA
101: GGERCNGRVA KKTSSNPPSQ MVVGWPPIRA YRMNSLVNQS KENTSAHTTI TSTHKKASQN IKNNKTGERI CCKEIEKKGR SSVNSLFVKV NLDGDPIGRK
201: VDLSSYPSYE TLALALEAMF LRQTLVLGSS IYDGPRTSKL LDGSSGFIIT YEDRDGDWML VGDVPWGMFL STVKRLRIMK TSGASGLAPR FHSWPNIGPC

Best Arabidopsis Sequence Match ( AT1G04550.2 )
(BLAST)

001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV

Arabidopsis Description

IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.