Factsheet for GSMUA_Achr10P06630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	64.84	64.22
GSMUA_Achr2P04230_001	Banana	nucleus	58.71	59.87
GSMUA_Achr11P...	Banana	nucleus	44.19	45.67
GSMUA_Achr9P26900_001	Banana	plastid	16.13	42.02
GSMUA_Achr9P26910_001	Banana	nucleus	16.77	35.86
GSMUA_Achr8P29850_001	Banana	nucleus	19.03	33.52
GSMUA_Achr9P16800_001	Banana	nucleus	18.71	33.33
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	20.65	28.07
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	20.97	27.66
GSMUA_Achr7P03120_001	Banana	nucleus	19.35	24.39
GSMUA_Achr7P13680_001	Banana	nucleus	26.13	22.07
GSMUA_AchrUn_...	Banana	nucleus	21.61	21.75
GSMUA_Achr9P08370_001	Banana	nucleus	16.77	20.47
GSMUA_Achr6P29100_001	Banana	nucleus	19.03	19.93

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G06630_001	EnsemblPlants:GSMUA_Achr10P06630_001
EnsemblPlants:GSMUA_Achr10T06630_001	InterPro:IPR000270	UniProt:M0RFZ0	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI000295C963	SEG:seg	:

Description

Putative Auxin-responsive protein IAA10 [Source:GMGC_GENE;Acc:GSMUA_Achr10G06630_001]

Coordinates

chr10:-:16931734..16934287

Molecular Weight (calculated)

32572.4 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.224

Length

310 amino acids

Sequence
(BLAST)

001: MQGVCGFDGG VASPESVSSV SKAAVAATEG GEEEGLVVDD VHGGAVGERE EEREVEVSNG EELELGLTLG AARKAKAAPA RRGACCRILT AKDFPSLAVR
101: ASRRSHSGSL ASSSSGTNRA GGTAGTKRAA ESVSPDDSQM VVGWPPIRAF RMNNFKTASG SRDQEDKGCA TRSSFFVKVK MDGDPIGRKV DLSAHHSYET
201: LAVALELMFH KPTMAFALAT AAHGAKVSKL LDASSEFALT YEDKDGDWML VGDVPWGMFL ETVKRLRIMR TSDANGLSQP VHFGKLELYA TPGILLSFNT
301: ASGSIGSSPA

Best Arabidopsis Sequence Match ( AT4G28640.1 )
(BLAST)

001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KAQMIL

Arabidopsis Description

IAA11Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A8MR39]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.