Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P26910_001 | Banana | nucleus | 81.51 | 66.9 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 50.42 | 58.82 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 39.5 | 57.32 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 32.77 | 42.86 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 50.42 | 40.0 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 50.42 | 37.5 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 48.74 | 36.71 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 51.26 | 35.47 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 49.58 | 35.12 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 51.26 | 34.46 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 48.74 | 33.33 |
| Os02t0805100-01 | Rice | nucleus | 49.58 | 32.42 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 46.22 | 31.98 |
| KXG19391 | Sorghum | nucleus | 54.62 | 31.86 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 46.22 | 31.43 |
| Os06t0166500-01 | Rice | nucleus | 47.06 | 30.6 |
| Zm00001d000288_P001 | Maize | cytosol | 50.42 | 30.46 |
| Zm00001d045203_P001 | Maize | cytosol | 53.78 | 29.63 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 43.7 | 29.38 |
| KXG31308 | Sorghum | cytosol | 47.9 | 28.93 |
| Zm00001d018414_P001 | Maize | nucleus | 46.22 | 26.7 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 41.18 | 26.63 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 36.13 | 24.71 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 36.13 | 24.43 |
| PGSC0003DMT400079375 | Potato | cytosol | 38.66 | 22.77 |
| Solyc07g008020.2.1 | Tomato | cytosol | 36.97 | 22.45 |
| KRH61758 | Soybean | nucleus | 42.02 | 22.12 |
| KRH52428 | Soybean | nucleus | 42.02 | 22.03 |
| KRH20139 | Soybean | nucleus | 36.13 | 20.87 |
| KRH03666 | Soybean | cytosol | 34.45 | 20.6 |
| PGSC0003DMT400035770 | Potato | cytosol | 36.97 | 20.09 |
| GSMUA_Achr7P03120_001 | Banana | nucleus | 40.34 | 19.51 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 39.5 | 19.42 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 36.97 | 19.38 |
| Solyc08g021820.2.1 | Tomato | nucleus | 36.97 | 19.38 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 34.45 | 17.98 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 35.29 | 17.87 |
| CDX68829 | Canola | nucleus | 32.77 | 17.11 |
| GSMUA_Achr2P04230_001 | Banana | nucleus | 43.7 | 17.11 |
| Bra011332.1-P | Field mustard | nucleus | 32.77 | 16.88 |
| CDX75231 | Canola | nucleus | 32.77 | 16.88 |
| GSMUA_Achr9P08370_001 | Banana | nucleus | 35.29 | 16.54 |
| CDY13478 | Canola | nucleus | 33.61 | 16.46 |
| Bra023958.1-P | Field mustard | nucleus | 33.61 | 16.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.86 | 16.29 |
| CDX72351 | Canola | nucleus | 33.61 | 16.19 |
| GSMUA_Achr10P... | Banana | nucleus | 42.02 | 16.13 |
| GSMUA_Achr11P... | Banana | nucleus | 40.34 | 16.0 |
| AT4G32280.1 | Thale cress | cytosol | 32.77 | 15.54 |
| GSMUA_Achr6P29100_001 | Banana | nucleus | 35.29 | 14.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.45 | 13.31 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 36.13 | 11.72 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G26900_001 | EnsemblPlants:GSMUA_Achr9P26900_001 |
| EnsemblPlants:GSMUA_Achr9T26900_001 | InterPro:IPR000270 | UniProt:M0U3U7 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF38 | SUPFAM:SSF54277 | UniParc:UPI0002950023 | : | : |
Description
Auxin-responsive protein IAA9 [Source:GMGC_GENE;Acc:GSMUA_Achr9G26900_001]
Coordinates
chr9:+:31252797..31253346
Molecular Weight (calculated)
13661.4 Da
IEP (calculated)
8.941
GRAVY (calculated)
-0.452
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLKCVCNSS GSRVLVGWPP VKMWRRKSNN CSRRRANCVK VNMEGVAIGR KVDLSLHDSY QAFFLTLGQM FPKKQHDGEE SDAAYYKVTY EDEDGDWMLV
101: GDVPWEAFIQ SVRRLKILN
101: GDVPWEAFIQ SVRRLKILN
001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
Arabidopsis Description
IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.