Factsheet for GSMUA_Achr6P29100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P08370_001	Banana	nucleus	48.65	56.69
GSMUA_Achr7P03120_001	Banana	nucleus	36.15	43.5
GSMUA_Achr9P26900_001	Banana	plastid	14.19	35.29
GSMUA_Achr9P26910_001	Banana	nucleus	15.54	31.72
GSMUA_Achr8P29850_001	Banana	nucleus	17.57	29.55
GSMUA_Achr9P16800_001	Banana	nucleus	16.22	27.59
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	18.58	23.4
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	17.91	23.25
Zm00001d049141_P002	Maize	nucleus	26.01	21.69
KXG28215	Sorghum	nucleus	26.01	21.51
Zm00001d004697_P001	Maize	nucleus	25.0	21.2
HORVU4Hr1G016160.1	Barley	plastid	25.68	21.17
TraesCS4B01G108600.2	Wheat	nucleus	25.34	20.83
TraesCS4A01G204900.1	Wheat	nucleus	25.34	20.78
TraesCS4D01G105700.1	Wheat	cytosol	26.01	20.48
GSMUA_Achr2P04230_001	Banana	nucleus	20.27	19.74
Os11t0221000-01	Rice	nucleus	18.58	19.1
GSMUA_Achr10P...	Banana	nucleus	19.93	19.03
GSMUA_Achr11P...	Banana	nucleus	18.92	18.67
GSMUA_AchrUn_...	Banana	nucleus	19.26	18.21
GSMUA_AchrUn_...	Banana	nucleus	18.24	17.53
GSMUA_Achr7P13680_001	Banana	nucleus	21.28	17.17

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G29100_001	EnsemblPlants:GSMUA_Achr6P29100_001
EnsemblPlants:GSMUA_Achr6T29100_001	InterPro:IPR000270	UniProt:M0TB55	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF19	SUPFAM:SSF54277	UniParc:UPI0002950B86	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G29100_001]

Coordinates

chr6:-:29405795..29408242

Molecular Weight (calculated)

32460.6 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.413

Length

296 amino acids

Sequence
(BLAST)

001: MKPMLFEPRF TRQEEGGAVD DHSQAMRAAS GLQSHLELSL GISSDTIFNV ATGRVGEKRH RGGSGELPAA FPVPIGDLAL HRSDEASLVE AMKRWSAADI
101: HSGFVHPWSL AARQQKAVLE QAHRSPSLTR LVQASAPLPP AHPVGWPPVR ASRKNIASAN LVRAAEMDGE KDAKRPKLGE GEAAKSEIRS RSTMFVKVNM
201: EGYVFGRKID LKAHDGYQSL SRALCKLFRN FLSSNCLGNS EEQDDEAVDD GFILLYEDNE GDQMLAGDIP WELFITSVKK LYIAPSPKRN DTGVVM

Best Arabidopsis Sequence Match ( AT1G51950.1 )
(BLAST)

001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR

Arabidopsis Description

IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.