Factsheet for Zm00001d004697_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28215	Sorghum	nucleus	76.22	74.3
Zm00001d049141_P002	Maize	nucleus	68.48	67.32
TraesCS4B01G108600.2	Wheat	nucleus	49.57	48.06
Os11t0221000-01	Rice	nucleus	39.54	47.92
TraesCS4A01G204900.1	Wheat	nucleus	49.28	47.65
HORVU4Hr1G016160.1	Barley	plastid	49.0	47.63
TraesCS4D01G105700.1	Wheat	cytosol	48.42	44.95
Zm00001d049715_P001	Maize	nucleus	20.92	31.33
Zm00001d039513_P001	Maize	cytosol, nucleus, plastid	17.19	26.2
Zm00001d010360_P001	Maize	cytosol, nucleus	16.62	25.44
GSMUA_Achr6P29100_001	Banana	nucleus	21.2	25.0
GSMUA_Achr9P08370_001	Banana	nucleus	18.05	24.8
Zm00001d000288_P001	Maize	cytosol	13.47	23.86
Zm00001d008201_P001	Maize	cytosol	8.6	23.08
Zm00001d045203_P001	Maize	cytosol	14.04	22.69
Zm00001d037691_P003	Maize	cytosol, nucleus	16.05	22.67
Zm00001d018414_P001	Maize	nucleus	13.18	22.33
Zm00001d040541_P001	Maize	nucleus, plastid	11.46	22.1
Zm00001d016277_P002	Maize	nucleus	18.62	21.74
Zm00001d051911_P002	Maize	nucleus	16.62	19.73
Zm00001d043515_P002	Maize	cytosol, mitochondrion, nucleus	18.34	17.93
Zm00001d038784_P001	Maize	nucleus	17.19	17.0

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A1D6EH13	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
ProteinID:ONM19432.1	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF35
SUPFAM:SSF54277	UniParc:UPI000845010B	EnsemblPlantsGene:Zm00001d004697	EnsemblPlants:Zm00001d004697_P001	EnsemblPlants:Zm00001d004697_T001	SEG:seg

Description

Aux/IAA-transcription factor 6IAA27-auxin-responsive Aux/IAA family member

Coordinates

chr2:+:131929878..131937148

Molecular Weight (calculated)

36453.4 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.383

Length

349 amino acids

Sequence
(BLAST)

001: MLNLAPFETP PLGRQETSAN NPTVAAVRGN EESSSNTCLH GHLDLSLGIS LSHGGCACAC DASSCGGNKQ ESYGGREGSS RDDKAAVGRC MTSGTTTTAS
101: VGHDAHAGDL TAGGGGWTAP FVLSPTAAFF MHPWSLAARQ QKAAAEQDRT PPPPTTYMSS DGDRAVTSPS AVGWPPVHTS RRNIIVTAMH VSRTAAGATA
201: VAAHDGPDDS TTTTTHAGRE KDAVAPPPPT GSSVVIAARR PPPANMFAKV HMDGYAIGRK INLRAQGGYA SLSRVLTNMT TNFYSPADCS TGATGTGEKD
301: LPTNNDKFIF LYEDFEGDRM LVGDVPWELF LASAKRLYIV RNPTSSDKG

Best Arabidopsis Sequence Match ( AT4G28640.3 )
(BLAST)

001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KGTFTDSIKS

Arabidopsis Description

IAA11Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A8MR39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.