Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d026480_P001 | |
| Zm00001d045026_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | Zm00001d045026_P002 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | Zm00001d045026_P002 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | Zm00001d026480_P001 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19391 | Sorghum | nucleus | 81.73 | 78.92 |
| Zm00001d045203_P001 | Maize | cytosol | 71.57 | 65.28 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 32.49 | 62.75 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 49.24 | 60.62 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 24.37 | 58.54 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 49.24 | 57.74 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 46.19 | 57.59 |
| Os06t0166500-01 | Rice | nucleus | 53.3 | 57.38 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 49.75 | 56.98 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 43.15 | 56.67 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 48.22 | 53.67 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 30.46 | 50.42 |
| Zm00001d018414_P001 | Maize | nucleus | 47.21 | 45.15 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 31.47 | 42.76 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 17.77 | 38.46 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 32.99 | 28.63 |
| PGSC0003DMT400079375 | Potato | cytosol | 27.92 | 27.23 |
| KRH20139 | Soybean | nucleus | 28.43 | 27.18 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 25.38 | 27.17 |
| KRH03666 | Soybean | cytosol | 27.41 | 27.14 |
| Solyc07g008020.2.1 | Tomato | cytosol | 26.9 | 27.04 |
| PGSC0003DMT400035770 | Potato | cytosol | 29.44 | 26.48 |
| KRH61758 | Soybean | nucleus | 29.95 | 26.11 |
| Solyc08g021820.2.1 | Tomato | nucleus | 29.95 | 25.99 |
| KRH52428 | Soybean | nucleus | 29.95 | 25.99 |
| Zm00001d008201_P001 | Maize | cytosol | 16.75 | 25.38 |
| Zm00001d049715_P001 | Maize | nucleus | 29.44 | 24.89 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 29.95 | 24.38 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 21.83 | 23.76 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 25.89 | 22.37 |
| CDX68829 | Canola | nucleus | 25.89 | 22.37 |
| AT4G32280.1 | Thale cress | cytosol | 28.43 | 22.31 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 25.89 | 22.27 |
| Bra011332.1-P | Field mustard | nucleus | 25.89 | 22.08 |
| CDX75231 | Canola | nucleus | 25.89 | 22.08 |
| CDX72351 | Canola | nucleus | 27.41 | 21.86 |
| CDY13478 | Canola | nucleus | 26.9 | 21.81 |
| Bra023958.1-P | Field mustard | nucleus | 26.9 | 21.81 |
| Zm00001d051911_P002 | Maize | nucleus | 31.98 | 21.43 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 25.89 | 20.65 |
| Zm00001d016277_P002 | Maize | nucleus | 26.9 | 17.73 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 25.89 | 14.29 |
| Zm00001d049141_P002 | Maize | nucleus | 24.87 | 13.8 |
| Zm00001d004697_P001 | Maize | nucleus | 23.86 | 13.47 |
| Zm00001d038784_P001 | Maize | nucleus | 22.34 | 12.46 |
Protein Annotations
| EntrezGene:100282670 | Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1X7YHJ4 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF38 |
| SUPFAM:SSF54277 | UniParc:UPI0000047D99 | EnsemblPlantsGene:Zm00001d000288 | EnsemblPlants:Zm00001d000288_P001 | EnsemblPlants:Zm00001d000288_T001 | SEG:seg |
Description
Aux/IAA-transcription factor 25Auxin-responsive protein IAA29
Coordinates
chrB73V4_ctg104:-:67198..68824
Molecular Weight (calculated)
21452.5 Da
IEP (calculated)
6.786
GRAVY (calculated)
-0.419
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLAPP NPHQPLAAAA EFVGLLSSSA GSCGNKRVLG DAFGAAKAAT LPLFVCEDGD GGGGDRDRDG VVDHEQQSNN VPRKKRLVGW PPVKCARRRS
101: CGGGYVKVKL EGVPIGRKVD VSIHGSYQEL LRTLESMFPS GNQQDHAEDE VVVSHERRRR HPYVVTYEDG EGDWLLVGDD VPWEVFVKSV KRLKILA
101: CGGGYVKVKL EGVPIGRKVD VSIHGSYQEL LRTLESMFPS GNQQDHAEDE VVVSHERRRR HPYVVTYEDG EGDWLLVGDD VPWEVFVKSV KRLKILA
001: MAYEKVNELN LKDTELCLGL PGRTEKIKEE QEVSCVKSNN KRLFEETRDE EESTPPTKTQ IVGWPPVRSS RKNNNSVSYV KVSMDGAPYL RKIDLKTYKN
101: YPELLKALEN MFKVMIGEYC EREGYKGSGF VPTYEDKDGD WMLVGDVPWD MFSSSCKRLR IMKGSDAPAL DSSL
101: YPELLKALEN MFKVMIGEYC EREGYKGSGF VPTYEDKDGD WMLVGDVPWD MFSSSCKRLR IMKGSDAPAL DSSL
Arabidopsis Description
IAA2Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ54]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.