Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g019450.2.1 | |
| Solyc07g042260.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | Solyc07g042260.2.1 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | Solyc07g042260.2.1 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | Solyc07g019450.2.1 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035770 | Potato | cytosol | 88.11 | 91.32 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 54.19 | 50.83 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 18.5 | 41.18 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 39.21 | 39.21 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 14.1 | 39.02 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 26.87 | 38.12 |
| KRH52428 | Soybean | nucleus | 37.0 | 37.0 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 19.38 | 36.97 |
| KRH61758 | Soybean | nucleus | 36.56 | 36.73 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 25.55 | 36.71 |
| Solyc07g008020.2.1 | Tomato | cytosol | 31.28 | 36.22 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 26.87 | 35.47 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 23.35 | 35.33 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 25.11 | 33.93 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 21.59 | 33.79 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 25.55 | 33.33 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 25.55 | 32.77 |
| Os06t0166500-01 | Rice | nucleus | 25.55 | 31.69 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 24.67 | 31.64 |
| CDX68829 | Canola | nucleus | 31.72 | 31.58 |
| AT4G32280.1 | Thale cress | cytosol | 34.8 | 31.47 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 24.23 | 31.43 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 23.79 | 31.4 |
| Os02t0805100-01 | Rice | nucleus | 25.11 | 31.32 |
| CDX72351 | Canola | nucleus | 33.92 | 31.17 |
| Bra011332.1-P | Field mustard | nucleus | 31.72 | 31.17 |
| CDX75231 | Canola | nucleus | 31.72 | 31.17 |
| KXG31308 | Sorghum | cytosol | 26.87 | 30.96 |
| KXG19391 | Sorghum | nucleus | 27.31 | 30.39 |
| CDY13478 | Canola | nucleus | 32.16 | 30.04 |
| Bra023958.1-P | Field mustard | nucleus | 32.16 | 30.04 |
| Zm00001d000288_P001 | Maize | cytosol | 25.99 | 29.95 |
| Zm00001d045203_P001 | Maize | cytosol | 27.31 | 28.7 |
| Zm00001d018414_P001 | Maize | nucleus | 25.99 | 28.64 |
| Solyc12g096980.1.1 | Tomato | nucleus | 23.35 | 22.75 |
| Solyc03g121060.2.1 | Tomato | nucleus | 24.23 | 19.16 |
| Solyc09g090910.1.1 | Tomato | nucleus | 23.35 | 18.79 |
| Solyc09g064530.2.1 | Tomato | nucleus | 22.91 | 16.25 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:G9HPX2 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| EMBL:JN379451 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 |
| SUPFAM:SSF54277 | EnsemblPlantsGene:Solyc08g021820.2 | EnsemblPlants:Solyc08g021820.2.1 | UniParc:UPI000243DC0F | SEG:seg | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPX2]
Coordinates
chr8:+:34547997..34549464
Molecular Weight (calculated)
26722.6 Da
IEP (calculated)
8.785
GRAVY (calculated)
-0.911
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLAIS NCNHFPINAI TSYRKNGFDD SFSDMKMKMK QKRCFEEAFH EDEGVVERKT LSLFIWNGQP NEDDDNHGRN KKPFNATCHK DFEEESLKLL
101: GWPPINTWRK KQFHHQGHAG WITNDRNNNN NNNNNVIVGG RNSMYVKVKM EGVPIGRKVD LRLYHSYQLF TQNLLQMFAR YQNSGKNSTR FTILYQDREG
201: DWMLAGDVPW KTFVETVQRI EIQKNEK
101: GWPPINTWRK KQFHHQGHAG WITNDRNNNN NNNNNVIVGG RNSMYVKVKM EGVPIGRKVD LRLYHSYQLF TQNLLQMFAR YQNSGKNSTR FTILYQDREG
201: DWMLAGDVPW KTFVETVQRI EIQKNEK
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.