Factsheet for Solyc12g096980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075427	Potato	nucleus	96.57	96.98
Solyc09g090910.1.1	Tomato	nucleus	65.24	53.9
CDY53196	Canola	nucleus	45.49	46.7
Bra022934.1-P	Field mustard	nucleus	48.5	46.69
CDX84693	Canola	nucleus	48.5	46.69
CDY17158	Canola	nucleus	47.21	46.61
CDY19477	Canola	nucleus	46.78	46.38
AT2G33310.2	Thale cress	nucleus	48.93	46.15
AT1G04550.2	Thale cress	cytosol	47.21	46.03
CDX79522	Canola	nucleus	48.5	45.94
CDY59182	Canola	nucleus	44.21	45.78
CDX89814	Canola	nucleus	45.49	45.11
Bra015326.1-P	Field mustard	nucleus	45.49	45.11
CDY18243	Canola	nucleus	44.64	45.02
Bra005508.1-P	Field mustard	nucleus	47.21	43.31
VIT_05s0049g01970.t01	Wine grape	nucleus	59.23	42.99
Solyc09g064530.2.1	Tomato	nucleus	50.64	36.88
Bra032503.1-P	Field mustard	nucleus	45.49	34.19
Solyc07g008020.2.1	Tomato	cytosol	22.32	26.53
Solyc03g121060.2.1	Tomato	nucleus	30.47	24.74
Solyc06g066020.2.1	Tomato	cytoskeleton, cytosol, nucleus	25.32	24.38
Solyc08g021820.2.1	Tomato	nucleus	22.75	23.35

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPV9	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379438	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc12g096980.1	EnsemblPlants:Solyc12g096980.1.1	UniParc:UPI000243DBF8	SEG:seg	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPV9]

Coordinates

chr12:+:65671995..65674340

Molecular Weight (calculated)

26157.9 Da

IEP (calculated)

7.273

GRAVY (calculated)

-0.618

Length

233 amino acids

Sequence
(BLAST)

001: MCSENNSSYS DETGLELGLG LGPSVTKTNK SSTKWCEYGR ILTAKDFPNG FITRRFNNIC TDENIGSAST SASQVVGWPP IRTYRMNSFN QSKITNADHQ
101: QEENVNKETE SSNKKINHGI NNTKNNDVDF VKVNMDGLPI GRKVNLSSHI CYETLAKILE EMFFKSTKTT NCGEKEQVTK SCKLLDGSSE FVLTYEDKDG
201: DWMLVGDVPW GMFLSNVKRL RIMRTTEAKG LCM

Best Arabidopsis Sequence Match ( AT2G33310.1 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSQVVGWP PIGSHRMNSL VNNQATKSAR
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.