Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400022133 | Potato | nucleus | 89.06 | 90.48 |
| VIT_07s0005g04380.t01 | Wine grape | nucleus | 50.62 | 52.94 |
| Solyc12g096980.1.1 | Tomato | nucleus | 36.88 | 50.64 |
| KRH19625 | Soybean | nucleus | 45.94 | 50.52 |
| KRH32251 | Soybean | nucleus | 45.0 | 50.17 |
| KRH67461 | Soybean | nucleus | 37.19 | 48.57 |
| Solyc09g090910.1.1 | Tomato | nucleus | 42.19 | 47.87 |
| KRG95739 | Soybean | nucleus | 33.75 | 40.15 |
| Solyc07g008020.2.1 | Tomato | cytosol | 17.81 | 29.08 |
| Solyc03g121060.2.1 | Tomato | nucleus | 25.31 | 28.22 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 19.06 | 25.21 |
| Solyc08g021820.2.1 | Tomato | nucleus | 16.25 | 22.91 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | UniProt:K4CU81 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:Solyc09g064530.2 | EnsemblPlants:Solyc09g064530.2.1 | UniParc:UPI000276C133 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:K4CU81]
Coordinates
chr9:-:61807992..61813204
Molecular Weight (calculated)
34003.3 Da
IEP (calculated)
9.377
GRAVY (calculated)
-0.337
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGTLGLMGF GGVTYGVSVD GSICTLSKED NNGVLLSSEA SSSYPDETQL ELGLGLSLGA SADVALPKAK TGARGGYAKI LTPKKDFPSL GSNSSSSCSS
101: SSVIKPNNAS CGTKRNADSI SPPRSSVSQV VGWPPIRTYR MNTLVNQTKL PPPEEFSVTN EKCKSKNTIA NAGSSKINNF AKEKGLVKAS LFVKVNMDGV
201: TIGRKVDLNA HNSYENLAQT LDNMFLRPST TVCARSSNVQ ELGVMSETTS SSRLLDGSSE FVLTYEDKDG DWMLVGDVPW EMFISSVKRL RVMRTSDANG
301: LGTSPTFMGR NGGRPGTKPI
101: SSVIKPNNAS CGTKRNADSI SPPRSSVSQV VGWPPIRTYR MNTLVNQTKL PPPEEFSVTN EKCKSKNTIA NAGSSKINNF AKEKGLVKAS LFVKVNMDGV
201: TIGRKVDLNA HNSYENLAQT LDNMFLRPST TVCARSSNVQ ELGVMSETTS SSRLLDGSSE FVLTYEDKDG DWMLVGDVPW EMFISSVKRL RVMRTSDANG
301: LGTSPTFMGR NGGRPGTKPI
001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV
Arabidopsis Description
IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.