CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67461	Soybean	nucleus	70.63	77.55
KRH32251	Soybean	nucleus	53.16	49.83
KRH19625	Soybean	nucleus	53.16	49.14
VIT_07s0005g04380.t01	Wine grape	nucleus	44.98	39.54
PGSC0003DMT400022133	Potato	nucleus	40.15	34.29
Solyc09g064530.2.1	Tomato	nucleus	40.15	33.75
KRH33660	Soybean	plastid	21.19	32.2
KRH69143	Soybean	plastid	21.19	31.67
KRG96613	Soybean	plastid	20.07	30.51
KRH68346	Soybean	plastid	20.07	30.0
KRH20139	Soybean	nucleus	19.7	25.73
KRH03666	Soybean	cytosol	18.96	25.63
KRH19441	Soybean	endoplasmic reticulum, vacuole	22.3	24.59
KRH02508	Soybean	endoplasmic reticulum, extracellular, plasma membrane	21.56	22.31
KRH09948	Soybean	nucleus	25.65	21.56
KRH61758	Soybean	nucleus	17.47	20.8
KRH52428	Soybean	nucleus	17.47	20.7
KRH23388	Soybean	nucleus	26.02	20.23
KRH47203	Soybean	nucleus	21.93	18.61
KRH44271	Soybean	nucleus	21.56	18.53

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A0R0ENE0	EMBL:ACUP02012131	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlantsGene:GLYMA_19G168500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	EnsemblPlants:KRG95739	ProteinID:KRG95739	ProteinID:KRG95739.1	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI0006EDE4BC
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:42928118..42932827

Molecular Weight (calculated)

29826.4 Da

IEP (calculated)

7.790

GRAVY (calculated)

-0.440

Length

269 amino acids

Sequence
(BLAST)

001: MWVLPHLLVT TNEAPLLPKK YSLTSQLETR AEKPLQCLKM TTLLLRILHL TLNFLSPYAP ANSSFTSLPI TAPSQVVGWP PLGAYRMNSY NSHAKSPATE
101: VFNSTLDKRA SNSAGVRKSA DGGSDSSNII SKEKGNLRTS LFVKVKMDGI PIGRKVDLGA HDSYETLAQT LEDMFDESTT VLTHKVGSNG EDHGTEVGTD
201: GHSKLLDGSS DFVLTYEDKE GDWVLVGDVP WWMFLNSVRR LRIMRTPEDN GLAPRLEEKN RRSNTSSYR

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.