CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32251	Soybean	nucleus	93.13	94.43
KRH67461	Soybean	nucleus	52.92	62.86
VIT_07s0005g04380.t01	Wine grape	nucleus	62.2	59.15
KRG95739	Soybean	nucleus	49.14	53.16
PGSC0003DMT400022133	Potato	nucleus	51.2	47.3
Solyc09g064530.2.1	Tomato	nucleus	50.52	45.94
KRG96613	Soybean	plastid	21.31	35.03
KRH33660	Soybean	plastid	21.31	35.03
KRH68346	Soybean	plastid	21.31	34.44
KRH69143	Soybean	plastid	20.96	33.89
KRH03666	Soybean	cytosol	21.31	31.16
KRH20139	Soybean	nucleus	21.99	31.07
KRH19441	Soybean	endoplasmic reticulum, vacuole	23.37	27.87
KRH09948	Soybean	nucleus	29.9	27.19
KRH02508	Soybean	endoplasmic reticulum, extracellular, plasma membrane	23.02	25.77
KRH23388	Soybean	nucleus	30.24	25.43
KRH47203	Soybean	nucleus	26.46	24.29
KRH52428	Soybean	nucleus	18.9	24.23
KRH44271	Soybean	nucleus	25.77	23.96
KRH61758	Soybean	nucleus	18.21	23.45

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A0R0GVW1	EMBL:ACUP02008193	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlantsGene:GLYMA_13G127000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	EnsemblPlants:KRH19625	ProteinID:KRH19625	ProteinID:KRH19625.1	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI00023CFD60
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:24008533..24012615

Molecular Weight (calculated)

31722.0 Da

IEP (calculated)

7.692

GRAVY (calculated)

-0.561

Length

291 amino acids

Sequence
(BLAST)

001: MSTVSKDDNL VLSSEDSSCP EESELELGLG LSLSSGPSSK SHHHHVHAPT TLYARIYTAK DFPSSAAAAS SSPSSSSSSS PNITAGTKRA AADSLVANNR
101: PSQVVGWPPL RTYRVNSFNS HAKSTEVFNS VAEKSKINNT VVRKTNDNDN DNNINAKEKR HLRSSLFVKV NMDGIPIGRK VDLSAHSSYE TLAQTLEDMF
201: NESTTVTTCK GSNGEDYGII IGGERHSKLL DGSSKFVLTY EDKEGDWMLV GDVPWGMFLS SVRRLRIMRT SEANGLAPRL EENIKQRCKP I

Best Arabidopsis Sequence Match ( AT2G33310.1 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSQVVGWP PIGSHRMNSL VNNQATKSAR
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.