Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61758 | Soybean | nucleus | 91.63 | 92.04 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 18.06 | 45.05 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 42.73 | 42.73 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 22.03 | 42.02 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 18.06 | 40.2 |
| PGSC0003DMT400035770 | Potato | cytosol | 37.89 | 39.27 |
| Solyc08g021820.2.1 | Tomato | nucleus | 37.0 | 37.0 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 13.22 | 36.59 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 37.89 | 35.54 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 24.67 | 35.0 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 22.03 | 34.48 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 25.99 | 33.91 |
| CDX68829 | Canola | nucleus | 33.92 | 33.77 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 25.55 | 33.72 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 23.35 | 33.54 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 22.03 | 33.33 |
| Bra023958.1-P | Field mustard | nucleus | 35.24 | 32.92 |
| CDY13478 | Canola | nucleus | 35.24 | 32.92 |
| Bra011332.1-P | Field mustard | nucleus | 33.48 | 32.9 |
| CDX75231 | Canola | nucleus | 33.48 | 32.9 |
| CDX72351 | Canola | nucleus | 35.68 | 32.79 |
| AT4G32280.1 | Thale cress | cytosol | 36.12 | 32.67 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 24.67 | 32.56 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 24.67 | 32.0 |
| Os06t0166500-01 | Rice | nucleus | 25.55 | 31.69 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 24.67 | 31.64 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 23.35 | 31.55 |
| Os02t0805100-01 | Rice | nucleus | 25.11 | 31.32 |
| KRH03666 | Soybean | cytosol | 27.31 | 31.16 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 24.23 | 31.07 |
| KRH20139 | Soybean | nucleus | 28.19 | 31.07 |
| KXG31308 | Sorghum | cytosol | 26.87 | 30.96 |
| KXG19391 | Sorghum | nucleus | 27.75 | 30.88 |
| Zm00001d000288_P001 | Maize | cytosol | 25.99 | 29.95 |
| Zm00001d045203_P001 | Maize | cytosol | 26.87 | 28.24 |
| Zm00001d018414_P001 | Maize | nucleus | 25.11 | 27.67 |
| KRH33660 | Soybean | plastid | 16.3 | 20.9 |
| KRG96613 | Soybean | plastid | 15.86 | 20.34 |
| KRH69143 | Soybean | plastid | 15.86 | 20.0 |
| KRH68346 | Soybean | plastid | 15.86 | 20.0 |
| KRH67461 | Soybean | nucleus | 21.59 | 20.0 |
| KRH19441 | Soybean | endoplasmic reticulum, vacuole | 20.7 | 19.26 |
| KRH32251 | Soybean | nucleus | 24.23 | 19.16 |
| KRH19625 | Soybean | nucleus | 24.23 | 18.9 |
| KRH02508 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 20.26 | 17.69 |
| KRG95739 | Soybean | nucleus | 20.7 | 17.47 |
| KRH09948 | Soybean | nucleus | 24.23 | 17.19 |
| KRH47203 | Soybean | nucleus | 23.79 | 17.03 |
| KRH44271 | Soybean | nucleus | 23.35 | 16.93 |
| KRH23388 | Soybean | nucleus | 23.35 | 15.32 |
Protein Annotations
| EntrezGene:100783359 | Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:ACUP02003419 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlantsGene:GLYMA_06G067700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | UniProt:I1K8U1 | InterPro:IPR000270 | EnsemblPlants:KRH52428 | ProteinID:KRH52428 | ProteinID:KRH52428.1 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 | SUPFAM:SSF54277 |
| UniParc:UPI00023C33B0 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:5171385..5173237
Molecular Weight (calculated)
26537.4 Da
IEP (calculated)
9.964
GRAVY (calculated)
-0.877
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MELESGLALP THNSVEEFKL NKSKQIVSLE LWRPSCGSDS EKRVKHNKRS FEESFGQFLK PFPLLVWSGQ PNEEEDRNEK VQRNIHTPNK NGDEENHLVG
101: WPPVKSWRRK ELHRQQYPAR GQIRNDRIQA NENQSRRPNS LYVKVNMEGV AIGRKINLRL FNSYQTLTSS LISMFAKYQK FEEVGESYTL NFQNEQGDWL
201: QVGHVPWQSF IGTVRRLVIL RNGSETI
101: WPPVKSWRRK ELHRQQYPAR GQIRNDRIQA NENQSRRPNS LYVKVNMEGV AIGRKINLRL FNSYQTLTSS LISMFAKYQK FEEVGESYTL NFQNEQGDWL
201: QVGHVPWQSF IGTVRRLVIL RNGSETI
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.