Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023958.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX72351 | Canola | nucleus | 95.06 | 93.52 |
| CDX68829 | Canola | nucleus | 76.95 | 82.02 |
| CDX75231 | Canola | nucleus | 76.95 | 80.95 |
| AT4G32280.1 | Thale cress | cytosol | 75.72 | 73.31 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 16.05 | 42.86 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 15.64 | 37.25 |
| KRH61758 | Soybean | nucleus | 33.74 | 36.28 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 11.93 | 35.37 |
| KRH52428 | Soybean | nucleus | 32.92 | 35.24 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 16.46 | 33.61 |
| CDY46895 | Canola | cytosol | 9.88 | 33.33 |
| PGSC0003DMT400035770 | Potato | cytosol | 30.04 | 33.33 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 30.04 | 32.16 |
| Solyc08g021820.2.1 | Tomato | nucleus | 30.04 | 32.16 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 30.04 | 30.17 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 18.52 | 30.0 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 17.7 | 29.66 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 20.58 | 29.07 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 18.93 | 28.75 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 20.58 | 28.74 |
| Os02t0805100-01 | Rice | nucleus | 21.4 | 28.57 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 20.58 | 28.57 |
| KXG19391 | Sorghum | nucleus | 23.87 | 28.43 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 20.58 | 28.25 |
| KXG31308 | Sorghum | cytosol | 22.22 | 27.41 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 19.34 | 27.33 |
| Zm00001d000288_P001 | Maize | cytosol | 21.81 | 26.9 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 18.52 | 26.79 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 17.28 | 26.58 |
| CDX95843 | Canola | plastid | 16.87 | 26.45 |
| Zm00001d045203_P001 | Maize | cytosol | 23.46 | 26.39 |
| Os06t0166500-01 | Rice | nucleus | 19.75 | 26.23 |
| CDY71609 | Canola | nucleus, plastid | 16.87 | 26.11 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 18.93 | 25.99 |
| CDX92140 | Canola | nucleus, plastid | 16.87 | 25.95 |
| Zm00001d018414_P001 | Maize | nucleus | 21.81 | 25.73 |
| CDX82361 | Canola | cytosol, plastid | 16.46 | 25.48 |
| CDX67874 | Canola | plastid | 18.11 | 25.43 |
| CDY25089 | Canola | plastid | 17.7 | 24.86 |
| CDY27511 | Canola | cytosol, plastid | 17.7 | 24.71 |
| CDY58757 | Canola | plastid | 17.28 | 24.42 |
| CDY51701 | Canola | nucleus | 20.16 | 24.38 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 17.28 | 24.14 |
| CDY48005 | Canola | cytosol, plastid | 17.28 | 24.14 |
| CDY11402 | Canola | plastid | 17.28 | 23.73 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 16.87 | 23.56 |
| CDX87072 | Canola | cytosol | 16.87 | 23.43 |
| CDY19477 | Canola | nucleus | 21.81 | 22.55 |
| CDX89814 | Canola | nucleus | 21.81 | 22.55 |
| CDY18243 | Canola | nucleus | 21.4 | 22.51 |
| CDY17158 | Canola | nucleus | 21.81 | 22.46 |
| CDY19790 | Canola | cytosol | 17.7 | 22.05 |
| CDY53196 | Canola | nucleus | 20.58 | 22.03 |
| CDY59182 | Canola | nucleus | 20.16 | 21.78 |
| CDX79522 | Canola | nucleus | 21.81 | 21.54 |
| CDX84693 | Canola | nucleus | 21.4 | 21.49 |
| CDY38374 | Canola | nucleus | 20.99 | 21.43 |
| CDY35203 | Canola | nucleus | 21.4 | 21.4 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 21.81 | 19.56 |
| CDX82399 | Canola | nucleus | 21.81 | 19.49 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 21.4 | 19.19 |
| CDY22876 | Canola | nucleus | 19.75 | 18.97 |
| CDX87863 | Canola | nucleus | 19.75 | 18.9 |
| CDY33844 | Canola | nucleus | 19.34 | 18.58 |
| CDX75884 | Canola | cytosol | 20.58 | 18.45 |
| CDY46058 | Canola | plastid | 12.35 | 17.96 |
| CDY34957 | Canola | nucleus | 19.34 | 17.47 |
| CDY46538 | Canola | nucleus | 19.34 | 17.41 |
| CDY43104 | Canola | nucleus | 18.93 | 17.23 |
| CDY53439 | Canola | nucleus | 19.34 | 17.22 |
| CDY64626 | Canola | cytosol | 18.93 | 17.1 |
| CDX92077 | Canola | nucleus | 18.93 | 16.14 |
| CDX92888 | Canola | nucleus | 21.4 | 12.84 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078FMB2 | UniProt:A0A078FMB2 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY13478 | ProteinID:CDY13478 | ProteinID:CDY13478.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00077780001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 | SUPFAM:SSF54277 | UniParc:UPI0002540FEC |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g51960DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMB2]
Coordinates
chrLK032035:+:577501..578652
Molecular Weight (calculated)
27863.7 Da
IEP (calculated)
5.358
GRAVY (calculated)
-0.572
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDLDLSLS PHTNSSKFGF CFDLNKHCAT EGVVSCLNTK QTRFDSMFWL ENMEEDCYVP KPCSFSLNGQ PDEEDEGPLE SDSTIVDDEE EDGEVVGWPP
101: IKSCMTKYHN YRRSRNHPYH HHGRRINIPN PTATIIGLRP SSSSTSSPRS SMYVKVKMDG VAIARKVDIK LFNSYESLTK SLITMFTQYQ DCDREDTSYK
201: FTFQGKEGDW LLPGDVPWKI FAESVHRISI IRDCPCAYTR LLF
101: IKSCMTKYHN YRRSRNHPYH HHGRRINIPN PTATIIGLRP SSSSTSSPRS SMYVKVKMDG VAIARKVDIK LFNSYESLTK SLITMFTQYQ DCDREDTSYK
201: FTFQGKEGDW LLPGDVPWKI FAESVHRISI IRDCPCAYTR LLF
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.