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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX87863
CDX89832
CDX89844
CDX92973
CDX94484
CDX94528
CDX94748
CDX94777
CDY10068
CDY10349
CDY10694
CDY15493
CDY18205
CDY18214
CDY21111
CDY21993
CDY22876
CDY24162
CDY24168
CDY25909
CDY27511
CDY30017
CDY30781
CDY32537
CDY33844
CDY36527
CDY36883
CDY36940
CDY38297
CDY39608
CDY41720
CDY41894
CDY46538
CDY47946
CDY48005
CDY48583
CDY49005
CDY50750
CDY53439
CDY53570
CDY53735
CDY54111
CDY55738
CDY61501
CDY63072
CDY63910
CDY67714
CDY69758

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19220.1 CDX89844 AT1G04100.1 21734647
AT1G19220.1 CDY18205 AT1G04100.1 21734647
AT1G19220.1 CDX89832 AT1G04250.1 21734647
AT1G19220.1 CDY10068 AT1G04250.1 21734647
AT1G19220.1 CDY15493 AT1G04250.1 21734647
AT1G19220.1 CDY18214 AT1G04250.1 21734647
AT1G19220.1 CDY32537 AT1G04250.1 21734647
AT1G19220.1 CDY63072 AT1G04250.1 21734647
AT1G19220.1 CDY36527 AT1G15050.1 21734647
AT1G19220.1 CDY39608 AT1G15050.1 21734647
AT1G19220.1 CDX94484 AT1G35240.1 21734647
AT1G19220.1 CDX94528 AT1G35240.1 21734647
AT1G19220.1 CDX94748 AT1G35240.1 21734647
AT1G19220.1 CDX94777 AT1G35240.1 21734647
AT1G19220.1 CDY21993 AT1G35240.1 21734647
AT1G19220.1 CDY24162 AT1G35240.1 21734647
AT1G19220.1 CDY24168 AT1G35240.1 21734647
AT1G19220.1 CDY36940 AT1G35240.1 21734647
AT1G19220.1 CDY41720 AT1G35240.1 21734647
AT1G19220.1 CDY48583 AT1G35240.1 21734647
AT1G19220.1 CDY49005 AT1G35240.1 21734647
AT1G19220.1 CDY53570 AT1G35240.1 21734647
AT1G19220.1 CDY54111 AT1G35240.1 21734647
AT1G19220.1 CDY55738 AT1G35240.1 21734647
AT1G19220.1 CDY67714 AT1G35240.1 21734647
AT1G19220.1 CDY69758 AT1G35240.1 21734647
AT1G19220.1 CDX87863 AT1G51950.1 18505759
AT1G19220.1 CDY22876 AT1G51950.1 18505759
AT1G19220.1 CDY33844 AT1G51950.1 18505759
AT1G19220.1 CDY46538 AT1G51950.1 18505759
AT1G19220.1 CDY53439 AT1G51950.1 18505759
AT1G19220.1 CDY27511 AT2G46990.1 21734647
AT1G19220.1 CDY48005 AT2G46990.1 21734647
AT1G19220.1 CDY21111 AT3G04730.1 21734647
AT1G19220.1 CDY30017 AT3G04730.1 21734647
AT1G19220.1 CDY41894 AT3G04730.1 21734647
AT1G19220.1 CDY50750 AT3G04730.1 21734647
AT1G19220.1 CDX92973 AT3G23050.1 21734647
AT1G19220.1 CDY10349 AT3G23050.1 21734647
AT1G19220.1 CDY10694 AT3G23050.1 21734647
AT1G19220.1 CDY30781 AT3G23050.1 21734647
AT1G19220.1 CDY63910 AT3G23050.1 21734647
AT1G19220.1 CDY36883 AT4G14560.1 21734647
AT1G19220.1 CDY53735 AT4G14560.1 21734647
AT1G19220.1 CDY36883 AT4G14560.1 9342315
AT1G19220.1 CDY53735 AT4G14560.1 9342315
AT1G19220.1 CDY25909 AT5G57420.1 21734647
AT1G19220.1 CDY38297 AT5G57420.1 21734647
AT1G19220.1 CDY47946 AT5G57420.1 21734647
AT1G19220.1 CDY61501 AT5G57420.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96672 Canola nucleus 93.63 93.63
CDY26690 Canola nucleus 89.9 87.42
CDY41030 Canola nucleus 89.61 86.39
AT1G19220.1 Thale cress nucleus 89.8 84.35
KRH37536 Soybean nucleus 66.18 60.0
KRH12587 Soybean nucleus 65.39 59.45
KRH19355 Soybean nucleus 65.0 58.62
GSMUA_Achr3P10240_001 Banana nucleus 35.49 58.39
VIT_11s0016g00640.t01 Wine grape nucleus 65.98 58.27
KRH02575 Soybean nucleus 64.71 58.1
CDX92437 Canola nucleus 59.12 57.98
Solyc07g042260.2.1 Tomato nucleus 62.35 55.94
CDY45069 Canola nucleus 60.88 55.8
GSMUA_Achr9P18170_001 Banana nucleus 46.67 55.74
PGSC0003DMT400006151 Potato nucleus 61.96 54.62
CDY16560 Canola nucleus 54.41 53.26
TraesCS7A01G160800.1 Wheat nucleus 52.94 50.66
TraesCS7D01G161900.1 Wheat nucleus 52.84 50.61
Os06t0196700-02 Rice nucleus 52.25 50.52
Zm00001d045026_P002 Maize nucleus 51.76 50.14
KXG19536 Sorghum nucleus 51.47 49.86
TraesCS7B01G065800.2 Wheat plastid 52.45 49.49
HORVU7Hr1G033820.5 Barley nucleus 51.47 49.25
CDY02285 Canola nucleus 37.75 44.1
CDX90245 Canola nucleus 36.76 44.01
CDY12048 Canola nucleus 36.47 43.92
CDY09598 Canola nucleus 37.45 43.91
CDY53537 Canola nucleus 35.0 43.86
CDY07460 Canola nucleus 33.33 43.53
CDX74594 Canola nucleus 34.9 43.47
CDY39274 Canola nucleus 33.14 43.39
CDY62586 Canola nucleus 34.02 41.02
CDX83741 Canola nucleus 33.82 40.78
CDY61164 Canola nucleus 33.92 40.19
CDY01393 Canola nucleus 34.02 40.12
CDY29392 Canola nucleus 33.63 39.16
CDY27291 Canola nucleus 23.63 38.93
CDY39348 Canola nucleus 33.24 38.57
CDY47607 Canola nucleus 22.55 38.08
CDX80025 Canola nucleus 21.57 37.67
CDY67714 Canola nucleus 19.61 37.66
CDY10978 Canola nucleus 22.94 37.44
CDY50434 Canola nucleus 22.94 37.44
CDY69758 Canola nucleus 15.1 37.02
CDY21993 Canola nucleus 19.71 36.88
CDY48583 Canola nucleus 19.71 36.75
CDX95705 Canola nucleus 19.61 36.7
CDY03502 Canola nucleus 21.57 36.67
CDY65065 Canola nucleus 23.53 36.31
CDY33603 Canola nucleus 23.43 36.16
CDX94748 Canola endoplasmic reticulum, vacuole 11.86 32.7
CDY31545 Canola nucleus 24.22 32.63
CDX80168 Canola nucleus 23.82 32.02
CDY41720 Canola nucleus 17.25 32.0
CDY53570 Canola nucleus 15.69 31.94
CDX86939 Canola nucleus 26.47 31.76
CDY00245 Canola nucleus 26.47 31.73
CDX87230 Canola nucleus 25.39 31.28
CDY36940 Canola nucleus 16.96 31.23
CDY24168 Canola nucleus 17.06 30.91
CDY67247 Canola nucleus 25.78 30.9
CDX94777 Canola nucleus 16.86 30.88
CDY49005 Canola nucleus 16.86 30.88
CDY16798 Canola nucleus 25.78 29.99
CDY54111 Canola nucleus 16.37 29.45
CDY55738 Canola nucleus 15.2 28.7
CDX94484 Canola nucleus 15.2 24.76
CDX94528 Canola nucleus 14.8 22.57
CDY24162 Canola nucleus 12.75 20.0
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90GO:A0A078D8W1InterPro:AUX/IAA_dom
InterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlants:CDX83778ProteinID:CDX83778ProteinID:CDX83778.1InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009725GO:GO:0009734GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00139521001InterPro:IPR000270InterPro:IPR003340
InterPro:IPR015300InterPro:PB1_domPFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863
PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF21SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277
UniParc:UPI0004EC90FDSEG:seg::::
Description
BnaC08g18670D
Coordinates
chrLK031834:+:395506..399759
Molecular Weight (calculated)
113092.0 Da
IEP (calculated)
6.647
GRAVY (calculated)
-0.590
Length
1020 amino acids
Sequence
(BLAST)
0001: MKAPSNGFHP NSTEGEKKPI NSQLWHACAG PMVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSSHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLLAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLVMRFRMMF
0301: ETEDCGVRRY MGTVTGVSDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE
0401: FGMKDAQSSM FPGLSLVQWM GMQQNNTLSA GYTTTQLPSA YNLPNNFAAN DPSKLFNFQS PNLSPVNSQF NKPNMVSSHI SQQMQVQPAM VKSQQQEQQK
0501: VQMSHQQLQQ GVFNAGCANN GVSVVSCQNQ STGFSQSELQ QQSMLSNGSA KMNNQNKGSS QMTLQELQFQ QQMELHNSSQ NQQEQSSMHS LQQNPQQLQM
0601: QQQPSQPSPS QKLQLQLLQK LQQQQQSIPP VSSSLQPQLS AALQQTQSHQ LQQLLSSQNQ QPFSASTFMQ PPQVQLSHHQ QQGHMNNKPL VAAGRRSHSG
0701: HTDGEAPPSC STSPSAKNTI HDNISPTNFL SRNQQQGQAV SVPEPDPVQE LYTKTESRNN LRSAADQINV STAGTTYCPD AVGTAQQQQQ AFPLPSFGDC
0801: QRNNLAFAGN LEAVTTSDAL YSQKDFQNLV PTYGNAPRDI ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GVNDSGIMNG GGLWPNQAQR MRTYTKVQKR
0901: GSVGRSIDVT RYSGYEELRN DLARMFGIEG QLEDPRPSDW KLVYTDHEND ILLVGDDPWE EFVNCVQNIK ILSSVEVQQM SLDGDLAAIP ATNQVCSETD
1001: SGNAWKVHYE DTSAAASFNR
Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.