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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34310.1 CDX83741 AT1G19850.1 22096563
AT1G34310.1 CDY01393 AT1G19850.1 22096563
AT1G34310.1 CDY29392 AT1G19850.1 22096563
AT1G34310.1 CDY39348 AT1G19850.1 22096563
AT1G34310.1 CDY61164 AT1G19850.1 22096563
AT1G34310.1 CDY62586 AT1G19850.1 22096563
AT1G34310.1 CDX94484 AT1G34310.1 22096563
AT1G34310.1 CDX94528 AT1G34310.1 22096563
AT1G34310.1 CDX94748 AT1G34310.1 22096563
AT1G34310.1 CDX94777 AT1G34310.1 22096563
AT1G34310.1 CDY21993 AT1G34310.1 22096563
AT1G34310.1 CDY24162 AT1G34310.1 22096563
AT1G34310.1 CDY24168 AT1G34310.1 22096563
AT1G34310.1 CDY36940 AT1G34310.1 22096563
AT1G34310.1 CDY41720 AT1G34310.1 22096563
AT1G34310.1 CDY48583 AT1G34310.1 22096563
AT1G34310.1 CDY49005 AT1G34310.1 22096563
AT1G34310.1 CDY53570 AT1G34310.1 22096563
AT1G34310.1 CDY54111 AT1G34310.1 22096563
AT1G34310.1 CDY55738 AT1G34310.1 22096563
AT1G34310.1 CDY67714 AT1G34310.1 22096563
AT1G34310.1 CDY69758 AT1G34310.1 22096563
AT1G34310.1 CDY27291 AT1G59750.1 22096563
AT1G34310.1 CDY33603 AT1G59750.1 22096563
AT1G34310.1 CDY65065 AT1G59750.1 22096563
AT1G34310.1 CDX82361 AT3G17600.1 21734647
AT1G34310.1 CDX92140 AT3G17600.1 21734647
AT1G34310.1 CDX95843 AT3G17600.1 21734647
AT1G34310.1 CDY46058 AT3G17600.1 21734647
AT1G34310.1 CDY46895 AT3G17600.1 21734647
AT1G34310.1 CDY71609 AT3G17600.1 21734647
AT1G34310.1 CDY03502 AT4G23980.1 22096563
AT1G34310.1 CDY10978 AT4G23980.1 22096563
AT1G34310.1 CDY47607 AT4G23980.1 22096563
AT1G34310.1 CDY50434 AT4G23980.1 22096563
AT1G34310.1 CDX86939 AT5G62000.1 21734647
AT1G34310.1 CDX87230 AT5G62000.1 21734647
AT1G34310.1 CDY00245 AT5G62000.1 21734647
AT1G34310.1 CDY16798 AT5G62000.1 21734647
AT1G34310.1 CDY67247 AT5G62000.1 21734647
AT1G34390.1 CDX94484 AT1G34310.1 21734647
AT1G34390.1 CDX94528 AT1G34310.1 21734647
AT1G34390.1 CDX94748 AT1G34310.1 21734647
AT1G34390.1 CDX94777 AT1G34310.1 21734647
AT1G34390.1 CDY21993 AT1G34310.1 21734647
AT1G34390.1 CDY24162 AT1G34310.1 21734647
AT1G34390.1 CDY24168 AT1G34310.1 21734647
AT1G34390.1 CDY36940 AT1G34310.1 21734647
AT1G34390.1 CDY41720 AT1G34310.1 21734647
AT1G34390.1 CDY48583 AT1G34310.1 21734647
AT1G34390.1 CDY49005 AT1G34310.1 21734647
AT1G34390.1 CDY53570 AT1G34310.1 21734647
AT1G34390.1 CDY54111 AT1G34310.1 21734647
AT1G34390.1 CDY55738 AT1G34310.1 21734647
AT1G34390.1 CDY67714 AT1G34310.1 21734647
AT1G34390.1 CDY69758 AT1G34310.1 21734647
AT1G34390.1 CDY27511 AT2G46990.1 21734647
AT1G34390.1 CDY48005 AT2G46990.1 21734647
AT1G34390.1 CDY21111 AT3G04730.1 21734647
AT1G34390.1 CDY30017 AT3G04730.1 21734647
AT1G34390.1 CDY41894 AT3G04730.1 21734647
AT1G34390.1 CDY50750 AT3G04730.1 21734647
AT1G34390.1 CDX92973 AT3G23050.1 21734647
AT1G34390.1 CDY10349 AT3G23050.1 21734647
AT1G34390.1 CDY10694 AT3G23050.1 21734647
AT1G34390.1 CDY30781 AT3G23050.1 21734647
AT1G34390.1 CDY63910 AT3G23050.1 21734647
AT1G34390.1 CDX80545 AT5G25890.1 21734647
AT1G34390.1 CDX87072 AT5G25890.1 21734647
AT1G34390.1 CDX88204 AT5G25890.1 21734647
AT1G34390.1 CDY19790 AT5G25890.1 21734647
AT1G35240.1 CDX89832 AT1G04250.1 21734647
AT1G35240.1 CDY10068 AT1G04250.1 21734647
AT1G35240.1 CDY15493 AT1G04250.1 21734647
AT1G35240.1 CDY18214 AT1G04250.1 21734647
AT1G35240.1 CDY32537 AT1G04250.1 21734647
AT1G35240.1 CDY63072 AT1G04250.1 21734647
AT1G35240.1 CDY53305 AT1G15580.1 21734647
AT1G35240.1 CDX92437 AT5G20730.1 21734647
AT1G35240.1 CDY16560 AT5G20730.1 21734647
AT1G35240.1 CDY45069 AT5G20730.1 21734647
AT1G35540.1 CDY53305 AT1G15580.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034234.1-P Field mustard nucleus 98.9 100.0
CDY21993 Canola nucleus 95.06 95.41
CDY67714 Canola nucleus 80.62 83.05
CDY69758 Canola nucleus 59.6 78.37
CDY53570 Canola nucleus 55.94 61.08
CDY41720 Canola nucleus 61.06 60.73
CDY36940 Canola nucleus 60.88 60.11
CDY49005 Canola nucleus 61.06 59.96
CDX94777 Canola nucleus 60.88 59.78
CDY54111 Canola nucleus 60.88 58.73
CDY24168 Canola nucleus 59.96 58.26
CDX94748 Canola endoplasmic reticulum, vacuole 38.76 57.3
CDY55738 Canola nucleus 53.93 54.63
AT1G34390.1 Thale cress nucleus 52.83 48.33
AT1G35520.1 Thale cress nucleus 52.29 48.23
AT1G35240.1 Thale cress nucleus 52.1 48.14
AT1G34410.1 Thale cress nucleus 53.02 47.85
AT1G35540.1 Thale cress nucleus 52.47 47.44
AT1G34310.1 Thale cress nucleus 50.82 46.88
CDX94484 Canola nucleus 52.47 45.85
AT1G34170.3 Thale cress nucleus 45.52 45.6
CDX94528 Canola nucleus 50.82 41.55
CDY47607 Canola nucleus 45.16 40.89
CDY10978 Canola nucleus 44.97 39.36
CDY50434 Canola nucleus 44.79 39.2
CDX80025 Canola nucleus 41.68 39.04
CDY24162 Canola nucleus 46.07 38.77
CDY03502 Canola nucleus 42.41 38.67
CDX95705 Canola nucleus 38.03 38.17
VIT_02s0025g01740.t01 Wine grape nucleus 45.89 36.8
KRH49135 Soybean nucleus 43.51 35.84
KRH00001 Soybean nucleus 42.6 35.09
PGSC0003DMT400031965 Potato nucleus 41.86 34.96
KRH75716 Soybean nucleus 43.69 34.54
GSMUA_Achr10P... Banana nucleus 42.05 34.48
CDY27291 Canola nucleus 38.94 34.41
KRH65922 Soybean nucleus 43.33 34.3
Solyc08g082630.2.1 Tomato nucleus 40.22 34.16
GSMUA_Achr2P19760_001 Banana nucleus 41.68 34.13
GSMUA_AchrUn_... Banana nucleus 39.49 34.02
Solyc08g008380.2.1 Tomato nucleus 42.41 33.97
CDY33603 Canola nucleus 39.49 32.68
CDY65065 Canola nucleus 39.31 32.53
GSMUA_Achr7P24330_001 Banana nucleus 39.49 32.43
Os01t0236300-01 Rice nucleus 38.57 30.19
EES02172 Sorghum nucleus 37.11 29.51
Zm00001d039267_P005 Maize nucleus 35.47 28.03
TraesCS3B01G190100.1 Wheat nucleus 37.84 27.31
TraesCS3D01G166700.1 Wheat nucleus 37.84 27.31
TraesCS3A01G159200.1 Wheat nucleus 37.84 27.27
CDX87230 Canola nucleus 39.49 26.09
CDX86939 Canola nucleus 40.22 25.88
HORVU3Hr1G032230.6 Barley nucleus, plastid 37.66 25.75
CDY00245 Canola nucleus 40.04 25.73
CDY67247 Canola nucleus 39.12 25.15
CDY16798 Canola nucleus 39.85 24.86
CDY39274 Canola nucleus 33.82 23.75
CDY07460 Canola nucleus 33.64 23.56
CDY31545 Canola nucleus 32.36 23.38
CDX80168 Canola nucleus 32.36 23.32
CDY53537 Canola nucleus 34.0 22.85
CDY12048 Canola nucleus 35.28 22.79
CDX74594 Canola nucleus 34.0 22.71
CDX90245 Canola nucleus 35.1 22.54
CDY09598 Canola nucleus 34.92 21.95
CDY02285 Canola nucleus 34.92 21.88
CDX83741 Canola nucleus 33.09 21.39
CDY62586 Canola nucleus 32.91 21.28
CDY61164 Canola nucleus 33.09 21.02
CDY01393 Canola nucleus 33.09 20.92
CDY29392 Canola nucleus 32.72 20.43
CDY39348 Canola nucleus 32.72 20.36
CDX83778 Canola nucleus 36.75 19.71
CDX96672 Canola nucleus 36.2 19.41
CDY26690 Canola nucleus 36.2 18.88
CDY41030 Canola nucleus 36.01 18.62
CDX92437 Canola nucleus 33.27 17.5
CDY16560 Canola nucleus 33.27 17.47
CDY45069 Canola nucleus 32.54 15.99
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90GO:A0A078IHK6UniProt:A0A078IHK6
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlants:CDY48583ProteinID:CDY48583ProteinID:CDY48583.1
InterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00091319001InterPro:IPR000270
InterPro:IPR003340InterPro:IPR015300InterPro:PB1_domPFAM:PF02309PFAM:PF02362PFAM:PF06507
PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF1SMART:SM01019SUPFAM:SSF101936
SUPFAM:SSF54277UniParc:UPI0004EE09D3::::
Description
BnaA09g01790DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078IHK6]
Coordinates
chrLK032779:-:133848..137405
Molecular Weight (calculated)
62555.5 Da
IEP (calculated)
6.614
GRAVY (calculated)
-0.419
Length
547 amino acids
Sequence
(BLAST)
001: MANNQTMNAQ PKFRGTEGVN RYLYDQLWKL CAGPLFDLPK IGEEVYYFPQ GNIEQLVASA NDNLCQLKPI FDISSRIHCN VISIKLKVET NTDEVYAKVS
101: LLPCSPEVEI TFPNDNNEQN IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIVAKDLH DHVWKFKHTF RGTPKRHLFT SGWKEFVKGK
201: SLAVGDSFVF LRGENGESRV GIRKTSHQQS DMSSSVISKE SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNMKFNTSS RFTMKFEGHD
301: FNEIIYSGTI VKMEDFSIYW KGSEWRNLQV QWDEAATIPR PNKVSLWEIE PLIPSSNILK SVIQNNKRQR EINEFVQICY AGPIISKPDY NDQMVQSTKE
401: NSTTNASSSF RLFGVDLTAS SKARDVLEPL ESYQKNKTSE IFEEENLDQT QAVTSLTEIQ RKELSFTTSS TKVHMEGVTR TVDLTVFDGY NHMIVELEKL
501: FNIEGKLHMH SQWKLTFKDH EGDMMLVGDD PWPKFCNIVK EIVISSK
Best Arabidopsis Sequence Match ( AT1G34410.1 )
(BLAST)
001: MESGNIVNAQ PKLSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVQAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDEIYAEI
101: TLMPDTTQVV IPTQSENRFR PLVNSFTKVL TASDTSAYGG FSVPKKHAIE CLPPLDMSQP LPAQEILAID LHDNQWRFRH NYRGTPQRHS LTTGWNEFIT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC IFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG
301: DDFSERRYFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLVPALNV PRSSLLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV
401: ASPMNISLRY RDTTEAAMNP SRLLMSYPVQ PMPKLNYNNQ MVTQIEENIT TKAGTNFRLF GVTLDTPPMI KDPIKQIGSD ISKLTERKKF GQSQTLRSPI
501: EIQSKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWKI AFTDSDGYEM LVGDDPWPEF CKMVKKILIY SKEEVKNLKS
601: SKSLSS
Arabidopsis Description
ARF21Putative auxin response factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.