Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra034234.1-P | Field mustard | nucleus | 98.9 | 100.0 |
CDY21993 | Canola | nucleus | 95.06 | 95.41 |
CDY67714 | Canola | nucleus | 80.62 | 83.05 |
CDY69758 | Canola | nucleus | 59.6 | 78.37 |
CDY53570 | Canola | nucleus | 55.94 | 61.08 |
CDY41720 | Canola | nucleus | 61.06 | 60.73 |
CDY36940 | Canola | nucleus | 60.88 | 60.11 |
CDY49005 | Canola | nucleus | 61.06 | 59.96 |
CDX94777 | Canola | nucleus | 60.88 | 59.78 |
CDY54111 | Canola | nucleus | 60.88 | 58.73 |
CDY24168 | Canola | nucleus | 59.96 | 58.26 |
CDX94748 | Canola | endoplasmic reticulum, vacuole | 38.76 | 57.3 |
CDY55738 | Canola | nucleus | 53.93 | 54.63 |
AT1G34390.1 | Thale cress | nucleus | 52.83 | 48.33 |
AT1G35520.1 | Thale cress | nucleus | 52.29 | 48.23 |
AT1G35240.1 | Thale cress | nucleus | 52.1 | 48.14 |
AT1G34410.1 | Thale cress | nucleus | 53.02 | 47.85 |
AT1G35540.1 | Thale cress | nucleus | 52.47 | 47.44 |
AT1G34310.1 | Thale cress | nucleus | 50.82 | 46.88 |
CDX94484 | Canola | nucleus | 52.47 | 45.85 |
AT1G34170.3 | Thale cress | nucleus | 45.52 | 45.6 |
CDX94528 | Canola | nucleus | 50.82 | 41.55 |
CDY47607 | Canola | nucleus | 45.16 | 40.89 |
CDY10978 | Canola | nucleus | 44.97 | 39.36 |
CDY50434 | Canola | nucleus | 44.79 | 39.2 |
CDX80025 | Canola | nucleus | 41.68 | 39.04 |
CDY24162 | Canola | nucleus | 46.07 | 38.77 |
CDY03502 | Canola | nucleus | 42.41 | 38.67 |
CDX95705 | Canola | nucleus | 38.03 | 38.17 |
VIT_02s0025g01740.t01 | Wine grape | nucleus | 45.89 | 36.8 |
KRH49135 | Soybean | nucleus | 43.51 | 35.84 |
KRH00001 | Soybean | nucleus | 42.6 | 35.09 |
PGSC0003DMT400031965 | Potato | nucleus | 41.86 | 34.96 |
KRH75716 | Soybean | nucleus | 43.69 | 34.54 |
GSMUA_Achr10P... | Banana | nucleus | 42.05 | 34.48 |
CDY27291 | Canola | nucleus | 38.94 | 34.41 |
KRH65922 | Soybean | nucleus | 43.33 | 34.3 |
Solyc08g082630.2.1 | Tomato | nucleus | 40.22 | 34.16 |
GSMUA_Achr2P19760_001 | Banana | nucleus | 41.68 | 34.13 |
GSMUA_AchrUn_... | Banana | nucleus | 39.49 | 34.02 |
Solyc08g008380.2.1 | Tomato | nucleus | 42.41 | 33.97 |
CDY33603 | Canola | nucleus | 39.49 | 32.68 |
CDY65065 | Canola | nucleus | 39.31 | 32.53 |
GSMUA_Achr7P24330_001 | Banana | nucleus | 39.49 | 32.43 |
Os01t0236300-01 | Rice | nucleus | 38.57 | 30.19 |
EES02172 | Sorghum | nucleus | 37.11 | 29.51 |
Zm00001d039267_P005 | Maize | nucleus | 35.47 | 28.03 |
TraesCS3B01G190100.1 | Wheat | nucleus | 37.84 | 27.31 |
TraesCS3D01G166700.1 | Wheat | nucleus | 37.84 | 27.31 |
TraesCS3A01G159200.1 | Wheat | nucleus | 37.84 | 27.27 |
CDX87230 | Canola | nucleus | 39.49 | 26.09 |
CDX86939 | Canola | nucleus | 40.22 | 25.88 |
HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 37.66 | 25.75 |
CDY00245 | Canola | nucleus | 40.04 | 25.73 |
CDY67247 | Canola | nucleus | 39.12 | 25.15 |
CDY16798 | Canola | nucleus | 39.85 | 24.86 |
CDY39274 | Canola | nucleus | 33.82 | 23.75 |
CDY07460 | Canola | nucleus | 33.64 | 23.56 |
CDY31545 | Canola | nucleus | 32.36 | 23.38 |
CDX80168 | Canola | nucleus | 32.36 | 23.32 |
CDY53537 | Canola | nucleus | 34.0 | 22.85 |
CDY12048 | Canola | nucleus | 35.28 | 22.79 |
CDX74594 | Canola | nucleus | 34.0 | 22.71 |
CDX90245 | Canola | nucleus | 35.1 | 22.54 |
CDY09598 | Canola | nucleus | 34.92 | 21.95 |
CDY02285 | Canola | nucleus | 34.92 | 21.88 |
CDX83741 | Canola | nucleus | 33.09 | 21.39 |
CDY62586 | Canola | nucleus | 32.91 | 21.28 |
CDY61164 | Canola | nucleus | 33.09 | 21.02 |
CDY01393 | Canola | nucleus | 33.09 | 20.92 |
CDY29392 | Canola | nucleus | 32.72 | 20.43 |
CDY39348 | Canola | nucleus | 32.72 | 20.36 |
CDX83778 | Canola | nucleus | 36.75 | 19.71 |
CDX96672 | Canola | nucleus | 36.2 | 19.41 |
CDY26690 | Canola | nucleus | 36.2 | 18.88 |
CDY41030 | Canola | nucleus | 36.01 | 18.62 |
CDX92437 | Canola | nucleus | 33.27 | 17.5 |
CDY16560 | Canola | nucleus | 33.27 | 17.47 |
CDY45069 | Canola | nucleus | 32.54 | 15.99 |
Protein Annotations
MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078IHK6 | UniProt:A0A078IHK6 |
InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY48583 | ProteinID:CDY48583 | ProteinID:CDY48583.1 |
InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00091319001 | InterPro:IPR000270 |
InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 |
PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF1 | SMART:SM01019 | SUPFAM:SSF101936 |
SUPFAM:SSF54277 | UniParc:UPI0004EE09D3 | : | : | : | : |
Description
BnaA09g01790DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078IHK6]
Coordinates
chrLK032779:-:133848..137405
Molecular Weight (calculated)
62555.5 Da
IEP (calculated)
6.614
GRAVY (calculated)
-0.419
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNQTMNAQ PKFRGTEGVN RYLYDQLWKL CAGPLFDLPK IGEEVYYFPQ GNIEQLVASA NDNLCQLKPI FDISSRIHCN VISIKLKVET NTDEVYAKVS
101: LLPCSPEVEI TFPNDNNEQN IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIVAKDLH DHVWKFKHTF RGTPKRHLFT SGWKEFVKGK
201: SLAVGDSFVF LRGENGESRV GIRKTSHQQS DMSSSVISKE SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNMKFNTSS RFTMKFEGHD
301: FNEIIYSGTI VKMEDFSIYW KGSEWRNLQV QWDEAATIPR PNKVSLWEIE PLIPSSNILK SVIQNNKRQR EINEFVQICY AGPIISKPDY NDQMVQSTKE
401: NSTTNASSSF RLFGVDLTAS SKARDVLEPL ESYQKNKTSE IFEEENLDQT QAVTSLTEIQ RKELSFTTSS TKVHMEGVTR TVDLTVFDGY NHMIVELEKL
501: FNIEGKLHMH SQWKLTFKDH EGDMMLVGDD PWPKFCNIVK EIVISSK
101: LLPCSPEVEI TFPNDNNEQN IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIVAKDLH DHVWKFKHTF RGTPKRHLFT SGWKEFVKGK
201: SLAVGDSFVF LRGENGESRV GIRKTSHQQS DMSSSVISKE SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNMKFNTSS RFTMKFEGHD
301: FNEIIYSGTI VKMEDFSIYW KGSEWRNLQV QWDEAATIPR PNKVSLWEIE PLIPSSNILK SVIQNNKRQR EINEFVQICY AGPIISKPDY NDQMVQSTKE
401: NSTTNASSSF RLFGVDLTAS SKARDVLEPL ESYQKNKTSE IFEEENLDQT QAVTSLTEIQ RKELSFTTSS TKVHMEGVTR TVDLTVFDGY NHMIVELEKL
501: FNIEGKLHMH SQWKLTFKDH EGDMMLVGDD PWPKFCNIVK EIVISSK
001: MESGNIVNAQ PKLSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVQAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDEIYAEI
101: TLMPDTTQVV IPTQSENRFR PLVNSFTKVL TASDTSAYGG FSVPKKHAIE CLPPLDMSQP LPAQEILAID LHDNQWRFRH NYRGTPQRHS LTTGWNEFIT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC IFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG
301: DDFSERRYFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLVPALNV PRSSLLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV
401: ASPMNISLRY RDTTEAAMNP SRLLMSYPVQ PMPKLNYNNQ MVTQIEENIT TKAGTNFRLF GVTLDTPPMI KDPIKQIGSD ISKLTERKKF GQSQTLRSPI
501: EIQSKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWKI AFTDSDGYEM LVGDDPWPEF CKMVKKILIY SKEEVKNLKS
601: SKSLSS
101: TLMPDTTQVV IPTQSENRFR PLVNSFTKVL TASDTSAYGG FSVPKKHAIE CLPPLDMSQP LPAQEILAID LHDNQWRFRH NYRGTPQRHS LTTGWNEFIT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC IFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG
301: DDFSERRYFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLVPALNV PRSSLLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV
401: ASPMNISLRY RDTTEAAMNP SRLLMSYPVQ PMPKLNYNNQ MVTQIEENIT TKAGTNFRLF GVTLDTPPMI KDPIKQIGSD ISKLTERKKF GQSQTLRSPI
501: EIQSKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWKI AFTDSDGYEM LVGDDPWPEF CKMVKKILIY SKEEVKNLKS
601: SKSLSS
Arabidopsis Description
ARF21Putative auxin response factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.