Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65065 | Canola | nucleus | 93.21 | 87.29 |
| CDY33603 | Canola | nucleus | 92.89 | 86.99 |
| AT1G59750.1 | Thale cress | nucleus | 92.73 | 86.32 |
| KRH26266 | Soybean | nucleus | 71.41 | 66.47 |
| Solyc01g103050.2.1 | Tomato | nucleus | 69.95 | 66.21 |
| KRH06026 | Soybean | nucleus | 71.08 | 66.17 |
| PGSC0003DMT400053380 | Potato | nucleus | 69.47 | 65.75 |
| VIT_12s0035g01800.t01 | Wine grape | nucleus | 70.76 | 64.6 |
| KRH51289 | Soybean | nucleus | 70.27 | 64.54 |
| GSMUA_Achr9P08310_001 | Banana | vacuole | 47.33 | 60.16 |
| GSMUA_Achr10P... | Banana | nucleus | 64.3 | 59.05 |
| GSMUA_Achr6P07390_001 | Banana | nucleus | 61.39 | 58.02 |
| Os02t0557200-01 | Rice | nucleus | 63.17 | 57.67 |
| Os04t0442000-01 | Rice | nucleus | 62.52 | 57.5 |
| Zm00001d050781_P001 | Maize | nucleus | 58.48 | 57.46 |
| TraesCS2A01G309300.1 | Wheat | nucleus | 60.42 | 57.19 |
| TraesCS2D01G307600.1 | Wheat | nucleus | 60.42 | 57.19 |
| TraesCS2B01G326400.1 | Wheat | nucleus | 60.26 | 57.03 |
| EES06968 | Sorghum | nucleus | 61.87 | 56.99 |
| EES10850 | Sorghum | nucleus | 60.58 | 56.73 |
| GSMUA_Achr6P12780_001 | Banana | nucleus | 63.49 | 56.47 |
| HORVU2Hr1G076920.3 | Barley | nucleus | 60.42 | 55.99 |
| GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 62.36 | 55.38 |
| Zm00001d003601_P006 | Maize | nucleus | 59.77 | 54.25 |
| Zm00001d016838_P001 | Maize | nucleus | 61.39 | 54.05 |
| CDX80025 | Canola | nucleus | 48.63 | 51.54 |
| CDX95705 | Canola | nucleus | 44.26 | 50.28 |
| CDY47607 | Canola | nucleus | 48.47 | 49.67 |
| CDY03502 | Canola | nucleus | 46.37 | 47.83 |
| CDY10978 | Canola | nucleus | 47.82 | 47.36 |
| CDY50434 | Canola | nucleus | 47.33 | 46.88 |
| CDY67714 | Canola | nucleus | 34.57 | 40.3 |
| CDY69758 | Canola | nucleus | 26.66 | 39.66 |
| CDY21993 | Canola | nucleus | 34.9 | 39.63 |
| CDX87230 | Canola | nucleus | 52.99 | 39.61 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 23.59 | 39.46 |
| CDX86939 | Canola | nucleus | 54.12 | 39.41 |
| CDY00245 | Canola | nucleus | 54.12 | 39.37 |
| CDY48583 | Canola | nucleus | 34.41 | 38.94 |
| CDY53570 | Canola | nucleus | 31.5 | 38.92 |
| CDY67247 | Canola | nucleus | 53.47 | 38.9 |
| CDY41720 | Canola | nucleus | 34.09 | 38.36 |
| CDY16798 | Canola | nucleus | 53.47 | 37.74 |
| CDX94777 | Canola | nucleus | 32.79 | 36.45 |
| CDY49005 | Canola | nucleus | 32.63 | 36.27 |
| CDY36940 | Canola | nucleus | 31.5 | 35.2 |
| CDY24168 | Canola | nucleus | 31.83 | 34.99 |
| CDY54111 | Canola | nucleus | 31.99 | 34.92 |
| CDY55738 | Canola | nucleus | 30.05 | 34.44 |
| CDY31545 | Canola | nucleus | 38.29 | 31.31 |
| CDX80168 | Canola | nucleus | 38.13 | 31.09 |
| CDY07460 | Canola | nucleus | 38.61 | 30.6 |
| CDY39274 | Canola | nucleus | 38.45 | 30.55 |
| CDY53537 | Canola | nucleus | 38.61 | 29.36 |
| CDX74594 | Canola | nucleus | 38.61 | 29.18 |
| CDX94484 | Canola | nucleus | 29.24 | 28.91 |
| CDY12048 | Canola | nucleus | 38.29 | 27.98 |
| CDX90245 | Canola | nucleus | 37.96 | 27.58 |
| CDY09598 | Canola | nucleus | 38.29 | 27.24 |
| CDY02285 | Canola | nucleus | 38.29 | 27.15 |
| CDX83741 | Canola | nucleus | 36.67 | 26.83 |
| CDY62586 | Canola | nucleus | 36.67 | 26.83 |
| CDY61164 | Canola | nucleus | 36.35 | 26.13 |
| CDY01393 | Canola | nucleus | 36.51 | 26.13 |
| CDY29392 | Canola | nucleus | 36.51 | 25.8 |
| CDY39348 | Canola | nucleus | 36.35 | 25.6 |
| CDX94528 | Canola | nucleus | 26.66 | 24.66 |
| CDX96672 | Canola | nucleus | 38.93 | 23.63 |
| CDX83778 | Canola | nucleus | 38.93 | 23.63 |
| CDY26690 | Canola | nucleus | 39.42 | 23.26 |
| CDY24162 | Canola | nucleus | 24.07 | 22.92 |
| CDY41030 | Canola | nucleus | 39.1 | 22.87 |
| CDX92437 | Canola | nucleus | 38.29 | 22.79 |
| CDY16560 | Canola | nucleus | 38.29 | 22.74 |
| CDY45069 | Canola | nucleus | 37.48 | 20.84 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078GPN8 | UniProt:A0A078GPN8 |
| InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY27291 | ProteinID:CDY27291 | ProteinID:CDY27291.1 |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00037198001 | InterPro:IPR000270 |
| InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF24 | SMART:SM01019 | SUPFAM:SSF101936 |
| SUPFAM:SSF54277 | UniParc:UPI0004EE843F | SEG:seg | : | : | : |
Description
BnaC04g18710DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078GPN8]
Coordinates
chrLK032202:+:332018..335620
Molecular Weight (calculated)
69278.7 Da
IEP (calculated)
6.642
GRAVY (calculated)
-0.572
Length
619 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPQLAARNH SSGKPGGALS DALVRELWHA CAGPLVTLPR EGERVYYFPE GHMEQLEASM HQGLEQQMPS FNLPSKILCK VINIQRRAES ETDEVYAQIT
101: LLPEADQSEP MSPDAPVEEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA TDLHNNEWHF RHIFRGQPRR HLLTTGWSVF
201: VSSKKLVAGD AFIFLRQNEE LRVGVRRHMR QQTNIPSSVI SSHSMHIGVL ATAAHAITTG TIFSVFYKPR TSRSEFIVSV NRYLEAKNQK LSVGMRFKMR
301: FEGEEAPEKR FSGTIVGVQE NKSSVWHDSE WRSLKVQWDE SSSVFRPERV SPWELEPIVA NSMRSSHPPP QRNKRPRPPG LPSPTTAPST PVTADGLWKS
401: PAVNPSSVPL FSPSANGGNK SFGKQTNGNV CRLFGFELVE NVNVDECFSA ASVSGAVAVD QPVPSHEFDS GRQSEPLNVN QSNIPSGSGD PEKSSPRPIR
501: SCTKVHMQGS AVGRAVDLTR SECYEDLFRK LEEMFDIKGE LLESTKKWQV VYTDDEDDMM MVGDDPWNEF CGMVRKIFIY TPEEVKKLSP KNKLTVNVRM
601: QSKTDAEENG NTEGRSSLF
101: LLPEADQSEP MSPDAPVEEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA TDLHNNEWHF RHIFRGQPRR HLLTTGWSVF
201: VSSKKLVAGD AFIFLRQNEE LRVGVRRHMR QQTNIPSSVI SSHSMHIGVL ATAAHAITTG TIFSVFYKPR TSRSEFIVSV NRYLEAKNQK LSVGMRFKMR
301: FEGEEAPEKR FSGTIVGVQE NKSSVWHDSE WRSLKVQWDE SSSVFRPERV SPWELEPIVA NSMRSSHPPP QRNKRPRPPG LPSPTTAPST PVTADGLWKS
401: PAVNPSSVPL FSPSANGGNK SFGKQTNGNV CRLFGFELVE NVNVDECFSA ASVSGAVAVD QPVPSHEFDS GRQSEPLNVN QSNIPSGSGD PEKSSPRPIR
501: SCTKVHMQGS AVGRAVDLTR SECYEDLFRK LEEMFDIKGE LLESTKKWQV VYTDDEDDMM MVGDDPWNEF CGMVRKIFIY TPEEVKKLSP KNKLTVNVRM
601: QSKTDAEENG NTEGRSSLF
001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA
401: DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA
401: DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR
Arabidopsis Description
ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.