Factsheet for Os04t0442000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0236300-01
Os02t0557200-01
Os02t0628600-01
Os04t0442000-01
Os04t0519700-01
Os06t0685700-01
Os09t0106700-01
Os10t0479900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	Os02t0557200-01	AT1G59750.1	22096563
AT1G59750.1	Os04t0442000-01	AT1G59750.1	22096563
AT1G59750.1	Os02t0557200-01	AT1G59750.1	24485461
AT1G59750.1	Os04t0442000-01	AT1G59750.1	24485461
AT1G59750.1	Os02t0628600-01	AT2G28350.1	22096563
AT1G59750.1	Os04t0519700-01	AT2G28350.1	22096563
AT1G59750.1	Os06t0685700-01	AT2G28350.1	22096563
AT1G59750.1	Os10t0479900-01	AT2G28350.1	22096563
AT1G59750.1	Os09t0106700-01	AT3G50060.1	17675404
AT1G59750.1	Os01t0236300-01	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G326400.1	Wheat	nucleus	79.94	82.26
EES10850	Sorghum	nucleus	80.68	82.15
TraesCS2D01G307600.1	Wheat	nucleus	79.35	81.65
TraesCS2A01G309300.1	Wheat	nucleus	79.2	81.5
HORVU2Hr1G076920.3	Barley	nucleus	80.24	80.84
Zm00001d003601_P006	Maize	nucleus	78.45	77.42
Os02t0557200-01	Rice	nucleus	76.67	76.11
GSMUA_Achr9P08310_001	Banana	vacuole	48.14	66.53
GSMUA_Achr10P...	Banana	nucleus	65.08	64.99
KRH26266	Soybean	nucleus	64.19	64.96
VIT_12s0035g01800.t01	Wine grape	nucleus	65.23	64.75
Solyc01g103050.2.1	Tomato	nucleus	62.85	64.68
KRH06026	Soybean	nucleus	63.89	64.66
PGSC0003DMT400053380	Potato	nucleus	62.7	64.53
GSMUA_Achr6P07390_001	Banana	nucleus	62.11	63.82
VIT_18s0089g00910.t01	Wine grape	nucleus	61.37	63.64
GSMUA_Achr6P12780_001	Banana	nucleus	65.08	62.93
Os11t0523800-01	Rice	nucleus	34.18	62.84
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	64.78	62.55
CDY27291	Canola	nucleus	57.5	62.52
KRH51289	Soybean	nucleus	61.81	61.72
AT1G59750.1	Thale cress	nucleus	60.62	61.35
CDY65065	Canola	nucleus	58.99	60.06
Bra035427.1-P	Field mustard	nucleus	59.29	60.0
CDY33603	Canola	nucleus	58.84	59.91
Os01t0236300-01	Rice	nucleus	43.69	42.06
Os01t0927600-01	Rice	nucleus	48.59	40.47
Os12t0479400-02	Rice	nucleus	50.22	40.19
Os04t0671900-01	Rice	nucleus	36.4	29.95
Os08t0520550-01	Rice	nucleus	27.64	29.2
Os02t0164900-01	Rice	nucleus	38.19	28.3
Os06t0677800-01	Rice	nucleus	37.59	27.59
Os12t0613700-01	Rice	nucleus	36.11	27.03
Os04t0664400-01	Rice	nucleus	34.18	25.0
Os06t0702600-01	Rice	nucleus	36.4	24.72
Os06t0196700-02	Rice	nucleus	36.11	23.03
Os02t0141100-00	Rice	nucleus	36.4	21.95
Os08t0520500-01	Rice	cytosol	1.49	20.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4335934	EMBL:AK064925
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAF14793.1	ProteinID:BAS89354.1	ProteinID:CAE04227.2
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlantsGene:Os04g0442000	EnsemblPlants:Os04t0442000-01	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF24	UniProt:Q0JCZ4
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0000DD90C8	RefSeq:XP_015636800.1	SEG:seg

Description

AUXIN RESPONSE FACTOR 9Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP). (Os04t0442000-01)

Coordinates

chr4:+:22006405..22012018

Molecular Weight (calculated)

74752.3 Da

IEP (calculated)

5.784

GRAVY (calculated)

-0.429

Length

673 amino acids

Sequence
(BLAST)

001: MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ
101: PEADQSELTS LDPELQDLEK CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH IFRGQPRRHL LTTGWSVFVS
201: SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF
301: EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFGLWKPPS
401: EAAQTLSFSE PQRAREIFPS IPASIFSASS HVEFNSKNEP SILSNQFYWS MRDSKTDSFS ASTNKTRVER KQEPTTMGCR LFGIEISSAV EEALPAATVS
501: GVGYDQTVLS VDVDSDQISQ PSNGNKSDAP GTSSERSPLE SQSRQVRSCT KVIMQGMAVG RAVDLTKLNG YGDLRSKLEE MFDIQGDLCP TLKRWQVVYT
601: DDEDDMMLVG DDPWDEFCSM VKRIYIYSYE EAKLLAPKSK LPVIGDTIKL SSMNSSHESV DLDNHASVTN RDC

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.