Factsheet for Solyc01g103050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096070.2.1
Solyc01g103050.2.1
Solyc06g075150.2.1
Solyc11g069500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT1G59750.1	Solyc01g103050.2.1	AT1G59750.1	24485461
AT1G59750.1	Solyc06g075150.2.1	AT2G28350.1	22096563
AT1G59750.1	Solyc11g069500.1.1	AT2G28350.1	22096563
AT1G59750.1	Solyc01g096070.2.1	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053380	Potato	nucleus	97.09	97.09
VIT_12s0035g01800.t01	Wine grape	nucleus	79.2	76.4
KRH26266	Soybean	nucleus	74.46	73.23
KRH06026	Soybean	nucleus	73.85	72.63
KRH51289	Soybean	nucleus	72.63	70.47
CDY27291	Canola	nucleus	66.21	69.95
AT1G59750.1	Thale cress	nucleus	68.65	67.52
CDY65065	Canola	nucleus	68.2	67.47
CDY33603	Canola	nucleus	68.04	67.32
Bra035427.1-P	Field mustard	nucleus	68.35	67.22
GSMUA_Achr9P08310_001	Banana	vacuole	48.78	65.5
GSMUA_Achr10P...	Banana	nucleus	66.67	64.69
Zm00001d050781_P001	Maize	nucleus	62.23	64.6
Os02t0557200-01	Rice	nucleus	66.67	64.31
EES06968	Sorghum	nucleus	66.06	64.29
GSMUA_Achr6P07390_001	Banana	nucleus	63.46	63.36
EES10850	Sorghum	nucleus	63.91	63.24
Os04t0442000-01	Rice	nucleus	64.68	62.85
GSMUA_Achr6P12780_001	Banana	nucleus	66.36	62.36
TraesCS2D01G307600.1	Wheat	nucleus	62.08	62.08
TraesCS2B01G326400.1	Wheat	nucleus	62.08	62.08
TraesCS2A01G309300.1	Wheat	nucleus	62.08	62.08
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	65.44	61.41
Zm00001d016838_P001	Maize	nucleus	65.75	61.17
Zm00001d003601_P006	Maize	nucleus	62.84	60.26
HORVU2Hr1G076920.3	Barley	nucleus	61.01	59.73
Solyc12g006350.1.1	Tomato	nucleus	14.98	52.69
Solyc01g096070.2.1	Tomato	nucleus	51.53	48.91
Solyc08g082630.2.1	Tomato	nucleus	47.71	48.45
Solyc08g008380.2.1	Tomato	nucleus	48.32	46.27
Solyc12g042070.1.1	Tomato	nucleus	52.29	41.3
Solyc03g118290.2.1	Tomato	nucleus	52.6	40.66
Solyc07g043620.2.1	Tomato	nucleus	31.65	39.43
Solyc11g069190.1.1	Tomato	nucleus	39.3	31.69
Solyc03g031970.2.1	Tomato	nucleus	38.23	29.62
Solyc02g037530.2.1	Tomato	nucleus	38.07	29.57
Solyc04g081240.2.1	Tomato	nucleus	36.85	25.91
Solyc07g016180.2.1	Tomato	nucleus	38.53	22.66
Solyc05g047460.2.1	Tomato	nucleus	37.0	22.06
Solyc07g042260.2.1	Tomato	nucleus	38.23	21.99

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734
GO:GO:0009987	GO:GO:0010150	GO:GO:0042802	GO:GO:0045892	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	UniProt:K4B1N1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF24	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc01g103050.2	EnsemblPlants:Solyc01g103050.2.1	UniParc:UPI000276803F	SEG:seg	:

Description

Auxin response factor 1 [Source:Projected from Arabidopsis thaliana (AT1G59750) UniProtKB/Swiss-Prot;Acc:Q8L7G0]

Coordinates

chr1:+:91734025..91739992

Molecular Weight (calculated)

72609.0 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.496

Length

654 amino acids

Sequence
(BLAST)

001: MAHVAANHFG GGTHPGASAN NALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST HQGVDQHLPS FNLPAKILCK VMNVQLRAES ETDEVYAQIT
101: LLPEPDQGEI TSPDPPLPEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA SDLHGNEWHF RHIFRGQPRR HLLTTGWSVF
201: VSAKKLVAGD AFIFLRGDSG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIMT GTLFSVFYKP RTSQSEFIVS VNKYLEARNH KLSVGMRFKM
301: RFEGEEVPER RFSGTIVGVG DNPSSRWPDS EWRSLKVHWD EPSSILRPDR VSPWDMEPLV AATPTNTQPP QRNKRARPSV LPSPVQELPA LGMWKSPVDS
401: PSSFSYCDPS RGRDLYPSPK LSSAAKGLGY GENGSMPLST KTMYWSSQSE TCTESVAPAS EKRPANGCRL FGIELLDCPT IDESSSVAMP SAVVEDQPVP
501: SLNVDSDRNS EPSNPIPSVS CEPEKSSLRS THESQSKQIR SCTKVHMQGK AVGRAVDLTR LDSYEDLLKK LEVMFEIEGE LRGSTKKWQV VYTDDEDDMM
601: MVGDDPWHEF CSMVRKIYVY TAEEAKKLSP KIKLPVVDVK PVSDGATVGN NEKA

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.