Factsheet for Solyc08g008380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096070.2.1
Solyc01g103050.2.1
Solyc03g118290.2.1
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g008850.2.1
Solyc06g053840.2.1
Solyc06g066020.2.1
Solyc06g075150.2.1
Solyc07g042260.2.1
Solyc08g008380.2.1
Solyc08g021820.2.1
Solyc08g082630.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc11g069190.1.1
Solyc11g069500.1.1
Solyc12g007230.1.1
Solyc12g042070.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34310.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT1G34310.1	Solyc08g008380.2.1	AT1G34310.1	22096563
AT1G34310.1	Solyc08g082630.2.1	AT1G34310.1	22096563
AT1G34310.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT1G34310.1	Solyc08g008380.2.1	AT4G23980.1	22096563
AT1G34310.1	Solyc08g082630.2.1	AT4G23980.1	22096563
AT1G34310.1	Solyc03g118290.2.1	AT5G62000.1	21734647
AT1G34310.1	Solyc12g042070.1.1	AT5G62000.1	21734647
AT1G34390.1	Solyc08g008380.2.1	AT1G34310.1	21734647
AT1G34390.1	Solyc08g082630.2.1	AT1G34310.1	21734647
AT1G34390.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT1G35240.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT1G35240.1	Solyc07g042260.2.1	AT5G20730.1	21734647
AT4G23980.1	Solyc05g008850.2.1	AT1G15050.1	21734647
AT4G23980.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT4G23980.1	Solyc08g008380.2.1	AT1G35240.1	21734647
AT4G23980.1	Solyc08g082630.2.1	AT1G35240.1	21734647
AT4G23980.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT4G23980.1	Solyc06g075150.2.1	AT2G28350.1	22096563
AT4G23980.1	Solyc11g069500.1.1	AT2G28350.1	22096563
AT4G23980.1	Solyc03g120380.2.1	AT3G15540.1	22096563
AT4G23980.1	Solyc03g121060.2.1	AT3G16500.1	21734647
AT4G23980.1	Solyc01g096070.2.1	AT3G61830.1	22096563
AT4G23980.1	Solyc08g008380.2.1	AT4G23980.1	22096563
AT4G23980.1	Solyc08g082630.2.1	AT4G23980.1	22096563
AT4G23980.1	Solyc12g007230.1.1	AT4G29080.1	21734647
AT4G23980.1	Solyc06g066020.2.1	AT4G32280.1	21734647
AT4G23980.1	Solyc08g021820.2.1	AT4G32280.1	21734647
AT4G23980.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT4G23980.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT4G23980.1	Solyc09g083280.2.1	AT5G43700.1	21734647
AT4G23980.1	Solyc11g069190.1.1	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082630.2.1	Tomato	nucleus	59.15	62.73
VIT_02s0025g01740.t01	Wine grape	nucleus	60.47	60.56
CDY47607	Canola	nucleus	51.68	58.44
Bra013748.1-P	Field mustard	nucleus	51.24	58.14
KRH75716	Soybean	nucleus	58.86	58.09
KRH65922	Soybean	nucleus	58.57	57.89
KRH49135	Soybean	nucleus	56.08	57.68
KRH00001	Soybean	nucleus	55.34	56.93
Solyc01g096070.2.1	Tomato	nucleus	57.1	56.6
CDY10978	Canola	nucleus	51.68	56.48
AT4G23980.1	Thale cress	nucleus	52.71	56.43
Bra019255.1-P	Field mustard	nucleus	51.24	56.18
CDY50434	Canola	nucleus	51.24	56.0
CDY03502	Canola	nucleus	49.05	55.83
GSMUA_Achr2P19760_001	Banana	nucleus	51.39	52.54
GSMUA_Achr10P...	Banana	nucleus	50.51	51.72
GSMUA_AchrUn_...	Banana	nucleus	47.73	51.34
GSMUA_Achr7P24330_001	Banana	nucleus	49.34	50.6
Solyc01g103050.2.1	Tomato	nucleus	46.27	48.32
Solyc12g006350.1.1	Tomato	nucleus	12.59	46.24
CDY67714	Canola	nucleus	33.97	43.69
CDY21993	Canola	nucleus	34.41	43.12
Bra034234.1-P	Field mustard	nucleus	33.97	42.88
AT1G34310.1	Thale cress	nucleus	37.19	42.83
AT1G35540.1	Thale cress	nucleus	37.77	42.64
AT1G34390.1	Thale cress	nucleus	37.34	42.64
AT1G35240.1	Thale cress	nucleus	36.9	42.57
CDY48583	Canola	nucleus	33.97	42.41
AT1G35520.1	Thale cress	nucleus	36.6	42.16
AT1G34170.3	Thale cress	nucleus	33.53	41.94
CDY53570	Canola	nucleus	30.75	41.92
CDY69758	Canola	nucleus	25.48	41.83
Os01t0236300-01	Rice	nucleus	42.61	41.63
CDX94748	Canola	endoplasmic reticulum, vacuole	22.4	41.35
Bra027944.1-P	Field mustard	nucleus	33.24	41.35
CDY41720	Canola	nucleus	33.24	41.27
AT1G34410.1	Thale cress	nucleus	36.6	41.25
EES02172	Sorghum	nucleus	41.29	40.99
CDX94777	Canola	nucleus	32.8	40.22
CDY49005	Canola	nucleus	32.8	40.22
CDY36940	Canola	nucleus	31.92	39.35
CDY24168	Canola	nucleus	32.21	39.08
Bra018124.1-P	Field mustard	nucleus	31.33	38.56
CDY55738	Canola	nucleus	30.45	38.52
Bra017362.1-P	Field mustard	nucleus	30.31	38.33
Zm00001d039267_P005	Maize	nucleus	38.65	38.15
CDY54111	Canola	nucleus	31.63	38.1
TraesCS3A01G159200.1	Wheat	nucleus	41.87	37.68
TraesCS3D01G166700.1	Wheat	nucleus	41.58	37.47
TraesCS3B01G190100.1	Wheat	nucleus	41.58	37.47
Solyc03g118290.2.1	Tomato	nucleus	46.27	37.35
Solyc12g042070.1.1	Tomato	nucleus	44.95	37.08
HORVU3Hr1G032230.6	Barley	nucleus, plastid	41.58	35.5
Solyc07g043620.2.1	Tomato	nucleus	27.23	35.43
CDX94484	Canola	nucleus	29.58	32.27
Solyc11g069190.1.1	Tomato	nucleus	34.26	28.85
Solyc02g037530.2.1	Tomato	nucleus	34.26	27.79
Solyc03g031970.2.1	Tomato	nucleus	34.26	27.73
CDX94528	Canola	nucleus	26.94	27.5
CDY24162	Canola	nucleus	23.28	24.46
Solyc04g081240.2.1	Tomato	nucleus	32.36	23.76
Solyc05g047460.2.1	Tomato	nucleus	33.97	21.15
Solyc07g016180.2.1	Tomato	nucleus	34.41	21.13
Solyc07g042260.2.1	Tomato	nucleus	34.26	20.58

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4CIX2	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF17
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc08g008380.2	EnsemblPlants:Solyc08g008380.2.1	UniParc:UPI000276AC75
SEG:seg	:	:	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4CIX2]

Coordinates

chr8:+:2808202..2812983

Molecular Weight (calculated)

76149.7 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.509

Length

683 amino acids

Sequence
(BLAST)

001: MENQGSFMSN QQHQQHNFLA EGEDELCQEL WRLCAGPLVD VPKNEERVYY FPQGHMEQLE ASTNQELNQS IPLFNLQPKI LCRVLHIQLL AEQDSDEVYA
101: QIALLPEADQ VEPTSPDLSL PEPPRPKVHF FCKVLTASDT STHGGFSILR KHANECLPPL DMTQATPAQE LVAKDLHGFE WHFKHIFRGQ PRRHLLTTGW
201: STFVSSKRLV TGDSFVFLRS GKGEVRIGIR RLARQPSSMP QSVISSQSMH LGVLATASHA VTTQTMFVVY YKPRTSQFII GLNKYLEAVK HRYSVGMRFK
301: MKFEGEEIPE KRFTGTIVGV EDSSSQWKDS KWRSLKVQWD EPASVPRPDR VSPWDIEPFV ASVATPLVPP MGVKNKRHRA HNEPKSSEPV PAAALAAWIP
401: SAQFNPVIEG QSSDNPFSLH TSQTNSTATN STFKARVDGI WSASKVNASL NMLLDETEAS KSASPRPAFP SFASSQFGKQ NDLLLPSLDD ERKCGTITSC
501: RLFGIDLKCP SFGSVNENPP LEPANNSDGS AEGCSGNLTS AGDSEDNSGL SRDSEDQKQE QLNPPPKEVH IKQVSSTRTR TKVQMQGVAV GRAVDLTKLN
601: GYDELLRELE ELFDIQEELH ARNKWEIVFT DDEGDMMLMG DYPWSEFCNI AKRIFICSSQ DMKSFSAGTK SPSCLESETT AST

Best Arabidopsis Sequence Match ( AT4G23980.1 )
(BLAST)

001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN

Arabidopsis Description

ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.