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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001634.1-P
Bra002479.1-P
Bra003484.1-P
Bra007632.1-P
Bra007661.1-P
Bra009867.1-P
Bra011082.1-P
Bra011332.1-P
Bra011955.1-P
Bra012190.1-P
Bra013748.1-P
Bra014411.1-P
Bra014419.1-P
Bra015289.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra019255.1-P
Bra021117.1-P
Bra021184.1-P
Bra022164.1-P
Bra023958.1-P
Bra025775.1-P
Bra026166.1-P
Bra027232.1-P
Bra027504.1-P
Bra027944.1-P
Bra034234.1-P
Bra035427.1-P
Bra036557.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23980.1 Bra015289.1-P AT1G04100.1 21734647
AT4G23980.1 Bra026166.1-P AT1G15050.1 21734647
AT4G23980.1 Bra012190.1-P AT1G19850.1 22096563
AT4G23980.1 Bra016492.1-P AT1G19850.1 22096563
AT4G23980.1 Bra025775.1-P AT1G19850.1 22096563
AT4G23980.1 Bra017362.1-P AT1G35240.1 21734647
AT4G23980.1 Bra018124.1-P AT1G35240.1 21734647
AT4G23980.1 Bra027944.1-P AT1G35240.1 21734647
AT4G23980.1 Bra034234.1-P AT1G35240.1 21734647
AT4G23980.1 Bra035427.1-P AT1G59750.1 22096563
AT4G23980.1 Bra011955.1-P AT2G28350.1 22096563
AT4G23980.1 Bra001598.1-P AT3G15540.1 22096563
AT4G23980.1 Bra021117.1-P AT3G15540.1 22096563
AT4G23980.1 Bra027232.1-P AT3G15540.1 22096563
AT4G23980.1 Bra001634.1-P AT3G16500.1 21734647
AT4G23980.1 Bra021184.1-P AT3G16500.1 21734647
AT4G23980.1 Bra022164.1-P AT3G16500.1 21734647
AT4G23980.1 Bra007632.1-P AT3G61830.1 22096563
AT4G23980.1 Bra014419.1-P AT3G61830.1 22096563
AT4G23980.1 Bra003484.1-P AT3G62100.1 21734647
AT4G23980.1 Bra007661.1-P AT3G62100.1 21734647
AT4G23980.1 Bra014411.1-P AT3G62100.1 21734647
AT4G23980.1 Bra013748.1-P AT4G23980.1 22096563
AT4G23980.1 Bra019255.1-P AT4G23980.1 22096563
AT4G23980.1 Bra011082.1-P AT4G29080.1 21734647
AT4G23980.1 Bra011332.1-P AT4G32280.1 21734647
AT4G23980.1 Bra023958.1-P AT4G32280.1 21734647
AT4G23980.1 Bra009867.1-P AT5G25890.1 21734647
AT4G23980.1 Bra036557.1-P AT5G25890.1 21734647
AT4G23980.1 Bra009867.1-P AT5G25890.1 22096563
AT4G23980.1 Bra036557.1-P AT5G25890.1 22096563
AT4G23980.1 Bra027504.1-P AT5G43700.1 21734647
AT4G23980.1 Bra002479.1-P AT5G60450.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY03502 Canola nucleus 93.36 93.67
Bra019255.1-P Field mustard nucleus 88.7 85.71
AT4G23980.1 Thale cress nucleus 85.55 80.72
Bra014419.1-P Field mustard nucleus 53.16 57.66
Bra004530.1-P Field mustard nucleus 55.32 57.02
KRH65922 Soybean nucleus 64.62 56.3
KRH00001 Soybean nucleus 61.79 56.02
VIT_02s0025g01740.t01 Wine grape nucleus 62.96 55.57
KRH75716 Soybean nucleus 63.79 55.49
KRH49135 Soybean nucleus 60.96 55.27
Solyc08g082630.2.1 Tomato nucleus 55.81 52.17
PGSC0003DMT400031965 Potato nucleus 56.15 51.6
Solyc08g008380.2.1 Tomato nucleus 58.14 51.24
GSMUA_Achr10P... Banana nucleus 56.31 50.82
GSMUA_Achr2P19760_001 Banana nucleus 56.31 50.75
GSMUA_AchrUn_... Banana nucleus 52.99 50.24
GSMUA_Achr7P24330_001 Banana nucleus 55.48 50.15
Bra035427.1-P Field mustard nucleus 50.83 46.02
Bra034234.1-P Field mustard nucleus 40.86 45.47
Bra027944.1-P Field mustard nucleus 39.7 43.53
Bra025775.1-P Field mustard nucleus 32.56 41.7
Os01t0236300-01 Rice nucleus 47.84 41.2
EES02172 Sorghum nucleus 47.01 41.13
Bra018124.1-P Field mustard nucleus 37.04 40.18
Bra017362.1-P Field mustard nucleus 35.55 39.63
Zm00001d039267_P005 Maize nucleus 44.35 38.58
TraesCS3A01G159200.1 Wheat nucleus 46.68 37.02
TraesCS3B01G190100.1 Wheat nucleus 46.51 36.94
TraesCS3D01G166700.1 Wheat nucleus 46.35 36.81
Bra010048.1-P Field mustard nucleus 51.83 36.66
Bra035910.1-P Field mustard nucleus 51.49 34.91
HORVU3Hr1G032230.6 Barley nucleus, plastid 45.68 34.38
Bra007632.1-P Field mustard nucleus 53.49 30.52
Bra002479.1-P Field mustard nucleus 38.04 30.21
Bra004125.1-P Field mustard nucleus 37.21 28.72
Bra016492.1-P Field mustard nucleus 37.21 26.79
Bra028110.1-P Field mustard nucleus 37.04 26.42
Bra012190.1-P Field mustard nucleus 37.54 26.07
Bra010776.1-P Field mustard nucleus 35.22 25.48
Bra025720.1-P Field mustard nucleus 37.71 21.64
Bra016517.1-P Field mustard nucleus 36.05 21.49
Bra020125.1-P Field mustard nucleus 37.38 20.45
Bra002327.1-P Field mustard nucleus 37.21 15.57
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90ProteinID:AFD01307ProteinID:AFD01307.1
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlantsGene:Bra013748EnsemblPlants:Bra013748.1EnsemblPlants:Bra013748.1-P
InterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987InterPro:IPR000270InterPro:IPR003340
InterPro:IPR015300EMBL:JN979473UniProt:M4DB88InterPro:PB1_domPFAM:PF02309PFAM:PF02362
PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF1SMART:SM01019
SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI00025460A0SEG:seg::
Description
AT4G23980 (E=7e-182) ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor
Coordinates
chrA01:+:7566266..7569272
Molecular Weight (calculated)
68284.1 Da
IEP (calculated)
6.635
GRAVY (calculated)
-0.574
Length
602 amino acids
Sequence
(BLAST)
001: MYEELWKLSA GPLVDVPQAE ERVYYFPQGH MEQLEASTQQ DLNTMKPLFD LPPKILCRVM NVRLQAEKDT DEVYAQIMLM PEGTVDEPMS PDPSPPELQK
101: PKFHSFTKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYKWKFKH IFRGQPRRHL LTTGWSTFVT SKKLVAGDTF VFLRGENGEL
201: RVGVRRANRQ QSSMPSSVIS SHSMHLGVLA TACHATQTRS MFTVYYKPRT SQFIISVNKY LEAMNSKFSV GMRFKMRFEG DDSPERRFSG TVVGVQDCSP
301: HWKDSKWRSL IVNWDEPASF TRPDKVSPWE MEPFAASENV PQSVNKRARH VNEISALGVP SSNFWSSALT QSHEFAQSCI TSQRNPPQNS DWPVSPYSTL
401: NGQMVFPVEQ KKPETTTASC RLFGIDLMSS SLPAHEEKTA PMRPINITKP TLDSNADPKS EISKLSEEKK QEPAQASPKE VQSKQINSSR SRTKVQMQGV
501: PVGRAVDLTL INGYVELIDD LEKLFDIEGE LKSRNQWEIV FTDDEGDMML VGDDPWPEFC NMVKRIFIWS KEEVKKMTPG NQLRILLTEV DTTISKTENY
601: SN
Best Arabidopsis Sequence Match ( AT4G23980.2 )
(BLAST)
001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL GITASNLWSS VLTQPHEFAQ SCITSQWSSP
401: QQCHRDANED AKKSDWLNNS YSVSNVAKDS TLNDQMVSPV EQKKPETTAN YRLFGIDLMS SSLAVPEEKT APMRPINISK PTMDSHSDPK SEISKVSEEK
501: KQEPAEGSPK EVQSKQSSST RSRTKVQMQG VPVGRAVDLN ALKGYNELID DIEKLFDIKG ELRSRNQWEI VFTDDEGDMM LVGDDPWPEF CNMVKRIFIW
601: SKEEVKKMTP GNQLRMLLRE VETTLTTTSK TDNHSN
Arabidopsis Description
ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.