Factsheet for Os01t0236300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0190300-01
Os01t0231000-01
Os01t0236300-01
Os01t0286900-01
Os01t0675700-01
Os01t0741900-01
Os01t0927600-01
Os02t0228900-01
Os02t0557200-01
Os02t0628600-01
Os02t0723400-02
Os02t0805100-01
Os03t0633500-01
Os03t0633800-01
Os03t0742900-01
Os03t0797800-01
Os04t0442000-01
Os04t0519700-01
Os04t0653300-00
Os04t0664400-01
Os05t0230700-01
Os05t0523300-01
Os05t0559400-01
Os06t0166500-01
Os06t0196700-02
Os06t0335500-01
Os06t0685700-01
Os07t0182400-01
Os10t0479900-01
Os11t0523800-01
Os12t0479400-02
Os12t0601300-01
Os12t0601400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34310.1	Os04t0664400-01	AT1G19850.1	22096563
AT1G34310.1	Os01t0236300-01	AT1G34310.1	22096563
AT1G34310.1	Os02t0557200-01	AT1G59750.1	22096563
AT1G34310.1	Os04t0442000-01	AT1G59750.1	22096563
AT1G34310.1	Os01t0286900-01	AT3G17600.1	21734647
AT1G34310.1	Os02t0723400-02	AT3G17600.1	21734647
AT1G34310.1	Os01t0236300-01	AT4G23980.1	22096563
AT1G34310.1	Os01t0927600-01	AT5G62000.1	21734647
AT1G34310.1	Os11t0523800-01	AT5G62000.1	21734647
AT1G34310.1	Os12t0479400-02	AT5G62000.1	21734647
AT1G34390.1	Os01t0236300-01	AT1G34310.1	21734647
AT1G34390.1	Os01t0286900-01	AT2G46990.1	21734647
AT1G34390.1	Os02t0723400-02	AT2G46990.1	21734647
AT1G34390.1	Os03t0633500-01	AT3G04730.1	21734647
AT1G34390.1	Os03t0742900-01	AT3G04730.1	21734647
AT1G34390.1	Os12t0601300-01	AT3G04730.1	21734647
AT1G34390.1	Os03t0633500-01	AT3G23050.1	21734647
AT1G34390.1	Os03t0742900-01	AT3G23050.1	21734647
AT1G34390.1	Os12t0601300-01	AT3G23050.1	21734647
AT1G34390.1	Os01t0190300-01	AT5G25890.1	21734647
AT1G34390.1	Os01t0741900-01	AT5G25890.1	21734647
AT1G34390.1	Os02t0228900-01	AT5G25890.1	21734647
AT1G34390.1	Os05t0523300-01	AT5G25890.1	21734647
AT1G35240.1	Os03t0633500-01	AT1G04250.1	21734647
AT1G35240.1	Os03t0742900-01	AT1G04250.1	21734647
AT1G35240.1	Os12t0601300-01	AT1G04250.1	21734647
AT1G35240.1	Os06t0196700-02	AT5G20730.1	21734647
AT3G61830.1	Os03t0633500-01	AT1G04250.1	21734647
AT3G61830.1	Os03t0742900-01	AT1G04250.1	21734647
AT3G61830.1	Os12t0601300-01	AT1G04250.1	21734647
AT3G61830.1	Os01t0236300-01	AT1G34310.1	22096563
AT3G61830.1	Os01t0190300-01	AT1G51950.1	22096563
AT3G61830.1	Os01t0741900-01	AT1G51950.1	22096563
AT3G61830.1	Os02t0228900-01	AT1G51950.1	22096563
AT3G61830.1	Os05t0523300-01	AT1G51950.1	22096563
AT3G61830.1	Os01t0236300-01	AT3G61830.1	22096563
AT3G61830.1	Os04t0653300-00	AT5G57420.1	21734647
AT4G23980.1	Os04t0664400-01	AT1G19850.1	22096563
AT4G23980.1	Os01t0236300-01	AT1G35240.1	21734647
AT4G23980.1	Os02t0557200-01	AT1G59750.1	22096563
AT4G23980.1	Os04t0442000-01	AT1G59750.1	22096563
AT4G23980.1	Os02t0628600-01	AT2G28350.1	22096563
AT4G23980.1	Os04t0519700-01	AT2G28350.1	22096563
AT4G23980.1	Os06t0685700-01	AT2G28350.1	22096563
AT4G23980.1	Os10t0479900-01	AT2G28350.1	22096563
AT4G23980.1	Os01t0190300-01	AT3G16500.1	21734647
AT4G23980.1	Os01t0741900-01	AT3G16500.1	21734647
AT4G23980.1	Os02t0228900-01	AT3G16500.1	21734647
AT4G23980.1	Os05t0523300-01	AT3G16500.1	21734647
AT4G23980.1	Os01t0236300-01	AT3G61830.1	22096563
AT4G23980.1	Os01t0286900-01	AT3G62100.1	21734647
AT4G23980.1	Os02t0723400-02	AT3G62100.1	21734647
AT4G23980.1	Os01t0236300-01	AT4G23980.1	22096563
AT4G23980.1	Os01t0231000-01	AT4G29080.1	21734647
AT4G23980.1	Os01t0675700-01	AT4G29080.1	21734647
AT4G23980.1	Os05t0230700-01	AT4G29080.1	21734647
AT4G23980.1	Os05t0559400-01	AT4G29080.1	21734647
AT4G23980.1	Os06t0335500-01	AT4G29080.1	21734647
AT4G23980.1	Os02t0805100-01	AT4G32280.1	21734647
AT4G23980.1	Os06t0166500-01	AT4G32280.1	21734647
AT4G23980.1	Os01t0190300-01	AT5G25890.1	21734647
AT4G23980.1	Os01t0741900-01	AT5G25890.1	21734647
AT4G23980.1	Os02t0228900-01	AT5G25890.1	21734647
AT4G23980.1	Os05t0523300-01	AT5G25890.1	21734647
AT4G23980.1	Os01t0190300-01	AT5G25890.1	22096563
AT4G23980.1	Os01t0741900-01	AT5G25890.1	22096563
AT4G23980.1	Os02t0228900-01	AT5G25890.1	22096563
AT4G23980.1	Os05t0523300-01	AT5G25890.1	22096563
AT4G23980.1	Os03t0633800-01	AT5G43700.1	21734647
AT4G23980.1	Os03t0797800-01	AT5G43700.1	21734647
AT4G23980.1	Os07t0182400-01	AT5G43700.1	21734647
AT4G23980.1	Os12t0601400-01	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02172	Sorghum	nucleus	76.54	77.76
Zm00001d039267_P005	Maize	nucleus	70.96	71.68
TraesCS3D01G166700.1	Wheat	nucleus	74.11	68.34
TraesCS3B01G190100.1	Wheat	nucleus	74.11	68.34
TraesCS3A01G159200.1	Wheat	nucleus	73.82	67.98
HORVU3Hr1G032230.6	Barley	nucleus, plastid	74.11	64.75
Bra014419.1-P	Field mustard	nucleus	41.49	52.25
Os11t0523800-01	Rice	nucleus	26.9	51.37
Bra004530.1-P	Field mustard	nucleus	42.06	50.34
CDX80025	Canola	nucleus	41.92	50.17
VIT_02s0025g01740.t01	Wine grape	nucleus	47.5	48.68
AT3G61830.1	Thale cress	nucleus	41.63	48.34
CDX95705	Canola	nucleus	37.63	48.26
CDY47607	Canola	nucleus	41.34	47.85
Bra013748.1-P	Field mustard	nucleus	41.2	47.84
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	42.49	47.75
GSMUA_Achr10P...	Banana	nucleus	45.49	47.68
GSMUA_Achr2P19760_001	Banana	nucleus	45.49	47.6
KRH00001	Soybean	nucleus	44.92	47.29
KRH49135	Soybean	nucleus	44.49	46.84
VIT_15s0046g00290.t01	Wine grape	nucleus	46.64	46.44
CDY03502	Canola	nucleus	39.63	46.17
CDY10978	Canola	nucleus	40.92	45.76
CDY50434	Canola	nucleus	40.92	45.76
AT4G23980.1	Thale cress	nucleus	41.49	45.45
KRH65922	Soybean	nucleus	44.92	45.44
Bra019255.1-P	Field mustard	nucleus	40.49	45.43
KRH75716	Soybean	nucleus	44.78	45.23
PGSC0003DMT400000345	Potato	nucleus	43.92	44.82
PGSC0003DMT400031965	Potato	nucleus	41.92	44.73
Solyc08g082630.2.1	Tomato	nucleus	40.92	44.41
Solyc01g096070.2.1	Tomato	nucleus	43.63	44.27
KRH68924	Soybean	nucleus	41.92	44.26
Os02t0557200-01	Rice	nucleus	42.49	43.81
Os04t0442000-01	Rice	nucleus	42.06	43.69
Solyc08g008380.2.1	Tomato	nucleus	41.63	42.61
KRH06451	Soybean	nucleus	43.06	42.04
KRH47893	Soybean	nucleus	42.35	41.34
AT1G34390.1	Thale cress	nucleus	33.91	39.63
AT1G34310.1	Thale cress	nucleus	33.62	39.63
AT1G35540.1	Thale cress	nucleus	34.19	39.5
AT1G34410.1	Thale cress	nucleus	34.19	39.44
CDY69758	Canola	nucleus	23.46	39.42
AT1G35240.1	Thale cress	nucleus	33.33	39.36
Bra034234.1-P	Field mustard	nucleus	30.19	39.0
CDY21993	Canola	nucleus	30.33	38.9
CDY67714	Canola	nucleus	29.33	38.61
CDY48583	Canola	nucleus	30.19	38.57
AT1G35520.1	Thale cress	nucleus	32.62	38.45
CDY53570	Canola	nucleus	27.18	37.92
CDX94748	Canola	endoplasmic reticulum, vacuole	19.74	37.3
AT1G34170.3	Thale cress	nucleus	28.47	36.45
Bra027944.1-P	Field mustard	nucleus	28.47	36.25
CDY41720	Canola	nucleus	28.47	36.18
CDY49005	Canola	nucleus	28.76	36.09
CDX94777	Canola	nucleus	28.47	35.73
CDY54111	Canola	nucleus	28.33	34.92
CDY36940	Canola	nucleus	27.18	34.3
Bra018124.1-P	Field mustard	nucleus	26.9	33.87
Bra017362.1-P	Field mustard	nucleus	26.04	33.7
CDY24168	Canola	nucleus	27.04	33.57
Os01t0927600-01	Rice	nucleus	38.77	33.54
CDY55738	Canola	nucleus	25.75	33.33
Os12t0479400-02	Rice	nucleus	39.63	32.94
CDX94484	Canola	nucleus	25.61	28.59
Bra007632.1-P	Field mustard	nucleus	41.63	27.58
Os08t0520550-01	Rice	nucleus	23.89	26.22
Os04t0671900-01	Rice	nucleus	30.33	25.92
CDX94528	Canola	nucleus	24.03	25.11
Os12t0613700-01	Rice	nucleus	30.9	24.03
Os02t0164900-01	Rice	nucleus	31.19	24.01
Os06t0677800-01	Rice	nucleus	31.47	23.99
Os04t0664400-01	Rice	nucleus	29.04	22.07
Os06t0702600-01	Rice	nucleus	31.04	21.9
CDY24162	Canola	nucleus	19.89	21.38
Os06t0196700-02	Rice	nucleus	30.9	20.47
Os02t0141100-00	Rice	nucleus	32.05	20.07
Os08t0520500-01	Rice	cytosol	1.43	20.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4327785	EMBL:AB071300
EMBL:AK102521	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAD81271.1	ProteinID:BAF04442.1
ProteinID:BAS71229.1	UniProt:C6F1M3	InterPro:DNA-bd_pseudobarrel_sf	EMBL:EU847008	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os01g0236300	EnsemblPlants:Os01t0236300-01
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF17	UniProt:Q5NB85	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI000049E700	RefSeq:XP_015622434.1	SEG:seg	:	:	:

Description

AUXIN RESPONSE FACTOR 16Similar to Auxin response factor 18. (Os01t0236300-01);Similar to Auxin response factor 18. (Os01t0236300-02)

Coordinates

chr1:+:7547017..7551842

Molecular Weight (calculated)

77506.5 Da

IEP (calculated)

5.447

GRAVY (calculated)

-0.483

Length

699 amino acids

Sequence
(BLAST)

001: MSSQGAGGGV GDPELFAELW RACAGPLVEV PQRDERVFYF LQGHLEQLQE PTDPALLAEQ IKMFQVPYKI LCKVVNVELK AETETDEVFA QITLQPDPDQ
101: ENLPTLPDPP LPEQPRPVVH SFCKILTPSD TSTHGGFSVL RRHANECLPP LDMSMATPTQ ELITKDLHGS EWRFKHIYRG QPRRHLLTTG WSTFVTSKKL
201: ISGDAFVYLR SETGEQRVGV RRLVQKQSTM PASVISSQSM HLGVLASASH AIKTNSIFLV YYRPRLSQSQ YIVSVNKYLA ASKVGFNVGM RFKMSFEGED
301: VPVKKFSGTI VGEGDLSLQW SGSEWKSLKV QWDEVTNVNG PERVSPWEIE TCDGTAPAIN VPLQSATKNK RPREPSETID LQSLEPAQEF WLSGMPQQHE
401: KTGIGSSEPN CISGHQVVWP GEHPGYGAVS SSVCQNPLVL ESWLKDFNSS NKGVSPTLSE ISQKIFQVTS NEARIATWPA RSAYQAEEPT SKLSSNTAAC
501: GYRTEEVAPN ASKVVEGKKE PAMFRLFGVD LMKCTSISTT TDDKSSVGAG EASAKGTGSH EDSGQLSAFS KVTKEHIAAD ESPQEIQSHQ NYTARTRIKV
601: QMHGNAVGRA VDLANLDGYE QLMNELEEMF NIKDLKQKWK VAFTDDEGDT MEVGDDPWLE FCQMVRKIVL YPIEDEKKIE PHPKLLSSAN PEQDQKTGF

Best Arabidopsis Sequence Match ( AT1G59750.1 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA
401: DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.