Factsheet for Os11t0523800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0205700-01
Os05t0207500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	Os01t0205700-01	AT4G18710.1	18599455
AT5G62000.1	Os05t0207500-01	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83539	Sorghum	nucleus	79.51	35.71
Zm00001d049295_P001	Maize	nucleus	84.43	35.27
Os12t0479400-02	Rice	nucleus	79.78	34.72
Os04t0442000-01	Rice	nucleus	62.84	34.18
GSMUA_Achr6P08090_001	Banana	nucleus	76.23	33.86
Os02t0557200-01	Rice	nucleus	62.57	33.78
VIT_01s0244g00150.t01	Wine grape	nucleus	70.77	33.68
GSMUA_Achr10P...	Banana	nucleus	75.14	33.37
KRH41062	Soybean	nucleus	76.23	32.78
KRH59742	Soybean	nucleus	76.23	32.52
Solyc12g042070.1.1	Tomato	nucleus	73.5	32.49
GSMUA_Achr6P16450_001	Banana	nucleus	77.32	32.42
PGSC0003DMT400037454	Potato	nucleus	73.22	32.33
CDX86939	Canola	nucleus	74.86	32.24
CDX87230	Canola	nucleus	72.68	32.13
Bra010048.1-P	Field mustard	nucleus	74.32	31.96
CDY00245	Canola	nucleus	74.32	31.96
Solyc03g118290.2.1	Tomato	nucleus	73.77	31.91
KRH63855	Soybean	nucleus	73.5	31.91
AT5G62000.1	Thale cress	nucleus	74.86	31.9
KRH54110	Soybean	nucleus	73.22	31.79
VIT_17s0000g00320.t01	Wine grape	nucleus	74.86	31.79
Os01t0927600-01	Rice	nucleus	69.95	31.68
CDY67247	Canola	nucleus	73.5	31.61
PGSC0003DMT400036765	Potato	nucleus	72.95	31.6
GSMUA_AchrUn_...	Banana	nucleus	73.77	30.54
CDY16798	Canola	nucleus	72.68	30.33
Bra035910.1-P	Field mustard	nucleus	72.4	29.84
Os01t0236300-01	Rice	nucleus	51.37	26.9
Os08t0520550-01	Rice	nucleus	46.72	26.84
Os04t0671900-01	Rice	nucleus	48.36	21.64
Os12t0613700-01	Rice	nucleus	49.73	20.24
Os02t0164900-01	Rice	nucleus	49.18	19.82
Os06t0677800-01	Rice	nucleus	49.45	19.74
Os04t0664400-01	Rice	nucleus	48.09	19.13
Os06t0702600-01	Rice	nucleus	47.81	17.66
Os06t0196700-02	Rice	nucleus	46.17	16.02
Os02t0141100-00	Rice	nucleus	47.81	15.68
Os08t0520500-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A0P0Y2Y4	InterPro:Auxin_resp	InterPro:B3_DNA-bd
ProteinID:BAT14229.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlantsGene:Os11g0523800	EnsemblPlants:Os11t0523800-01	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF40	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0003938B8F	SEG:seg	:

Description

AUXIN RESPONSE FACTOR 1Similar to Isoform 3 of Auxin response factor 23. (Os11t0523800-01)

Coordinates

chr11:-:18935399..18941686

Molecular Weight (calculated)

40377.8 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.395

Length

366 amino acids

Sequence
(BLAST)

001: MATAEVGGGG GEGDAAAAAV ARGGGGGGGG GGGEDALFTE LWSACAGPLV TVPRVGEKVF YFPQGHIEQV EASTNQVGEQ RMQLYNLPWK ILCEVMNVEL
101: KAEPDTDEVY AQLTLLPESK QQEDNGSTEE EVPSAPAAGH VRPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGVEWRF
201: RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGENG ELRVGVRRAM RQQTNVPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPAEFVVP
301: YDRYMESLKQ NYSIGMRFKM RFEGEEAPEQ RFTGTIVGMG DSDPAGWPES KWRSLKVYFF RHFPFK

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.